Transcript Information: R_Transcript_20520.p1


Annotated TAIR IDAT5G55960.1
Annotated Gene Nameunknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0118 (InterPro:IPR002549); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:22662726-22664762 | Forward length=648
E-Value2E-06
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.6452456560986
Replicate 23.6797639904852
Replicate 33.7784309436953
Condition 2: 8 Hour
Replicate 17.3205163244341
Replicate 25.3020647664667
Replicate 34.4911201534978
Condition 3: 24 Hour
Replicate 14.0235332254739
Replicate 24.7748498629085
Replicate 36.0924538819199


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_20520.p1 GENE.R_Transcript_20520~~R_Transcript_20520.p1 ORF type:5prime_partial len:97 (+),score=8.39 R_Transcript_20520:2-292(+)
AGAGAACAATCTAGGGCAAATAAACCACCTGATGTAGAACTTGAAAAATGGAACTGGCTAGTTGATTTTTGGATGACAGAAAAAAGAACAGAATCCGGTGGAGTGATCGAACAAATCATGAAAATCATACCAGCACCAACATCTATGAAAAATCGATGTGTTCAGGCTCTCAACAATGCAATCTCAGGGGTGCTATACAGAGATAGCATTTTTTCAGTGCTCTTTCACTTGGCTTCTTTGCAGACTTTTCTCTATACACTAATATTTTGCTTTTTTTTCAGGAATGACTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_20520.p1 GENE.R_Transcript_20520~~R_Transcript_20520.p1 ORF type:5prime_partial len:97 (+),score=8.39 R_Transcript_20520:2-292(+)
REQSRANKPPDVELEKWNWLVDFWMTEKRTESGGVIEQIMKIIPAPTSMKNRCVQALNNAISGVLYRDSIFSVLFHLASLQTFLYTLIFCFFFRND*

Click here to download the sequence:
Link to NCBI Protein BLAST