Transcript Information: R_Transcript_206298.p1


Annotated TAIR IDAT3G21000.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:7363921-7365138 | Forward length=405
E-Value4E-27
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30.052060767263983
Condition 2: 8 Hour
Replicate 10.02782484653096
Replicate 20.050820186002695
Replicate 30.061880490751319
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_206298.p1 GENE.R_Transcript_206298~~R_Transcript_206298.p1 ORF type:3prime_partial len:880 (-),score=165.85,UBN2|PF14223.2|2.8e-37,rve|PF00665.22|3.6e-25,gag_pre-integrs|PF13976.2|2.8e+03,gag_pre-integrs|PF13976.2|1.1e-15,UBN2_2|PF14227.2|4.7e-10,UBN2_3|PF14244.2|6.1e-07,UBN2_3|PF14244.2|5.4e+03 R_Transcript_206298:2-2638(-)
ATGGCCACAGAAAATGGTAACTTTGTACAAGCCGCGATTCCCCGCTTTGATGGTCACTATGATCATTGGAGCATGTTGATGGAAAACTTTCTACGCTCGAAAGAGTACTGGACTGTTGTTAAGTCCGGGGTTCCAGAGCCATCAGAAGGTACCACTCAGACAGAGGCTCAAAAGGCTGAACTTGAAGCCCGAAGGCTGAAGGATTTAAAAGCCAAAAATTATCTCTTTCAAGCCATTGATCGTCCCACCTTGGAAACTATTCTTTGCAAAGATACCTCCAAGGATATTTGGGATTCTATGAAGAAAAAGTACCAAGGTTTAGCTCGGGTGAAGCGTGCACAACTTCAGGCTTTAAGAAAAGACTTTGAAGTTTTGGAGATGAAAGACAAAGAATCAGTCATCGGTTACTTTGCACGAACCATGGAACTTTGCAACAAAATGCGATTCCTTGGCGAAATGTTGTATGATGCTATCATTGTGCAAAAGATTTTGCGCTCTTTGACGAAGGACTTTAACTATGTCGTTTGCTCAATTGAAGAGTCACACGACATAGATGCGCTCACCCTTGACGAACTGCAAAGCTCTCTTCTGGTCCATGAGCAGAAAATGACCAAAAGCACAACAGCACAAGAGCAAGCATTGAAGGCTTCTACCAATTCCCATGTCAGTAGCACTAGGGGCAGAGGTAGAGGTAGATTCGGAGGTAGGGGAGATCGGGGAAACAGAGATTCCAGCAGGAATTTCAAAGATAAGTCCAAGGTAGAGTGCCATAGATGTCACAAATTTGGCCATTATGCACATGAATGTTACACAAAGCTGCCTATTAGGAAAGAGAAAGAGGAGAGTTCAAACTTTGCTGAGAAGGAAGAGGTCGAAACCCTGTTGATGGCTGTTCAAGATGGAGAAAGCTCCAGGTCTGATGTTTGGTATGTAGATACCGGTTGTAGCAACCACATGAGTGGAAGTAAGTCTTCTTTTTCATACTTGAATGAGGATTTCCGTTCTTCTGTTAGCTTTGGCGATAGCTCTACAGTCAAAGTAATGGGTAAAGGTGACATCAAAATAAGAACAAAGAATGGATTTGTTGAAACAATCTCTAATGTATTGTTCGTTCCGGAGCTGAAAAACAACCTGCTGAGTGCTGGACAGTTGCAAGAAAGGGGGTATATCATAACTATAAAATCTGGTGCCTGTGAAATTTATGATCCCAAGAGAGGTGCTGTGGCTGTTGTTCCGATGAATGCAAAAAGATTGTTTCCTTTAAAGATTGATAGCATTCAATCCTGTTTCGTGGCTGAATTAAAGGACCCTTCTTGGTTGTGGCATTATCGCTATGGACACTTGAGTTTTGGTGGCCTAAAGACGTTACAACAGAAGAATATGGTGACTGGACTTCCTCAACTCACGGCCCCTACACGTGTATGTGAAGTTTGTGTTGTTAGCAAACAACCTCGTTCATCGTTCCCATCAGGAAAATCATGGAGAGCAAAGGAGGTGCTACAGCTAGTACACTTTGATATTTGTGGTCCTTTAAAACCACATTCTAATGGAGGTAAAAAATATTTTATTACTTTCACTGATGATTTTTCCAGAAAAACTTGGGTTTATTTTCTGACAGAAAAATCAGAAGCATTCTCAACATTCAAGAATTTCAAGGCTCGCGTTGAGAACGAATCAGGAAAGACCATCAAGAGTCTCCGAACTGATCGCGGTGGCGAATATTGTTCAAACGAGTTTGAATCTTTCAGCCAGGAACATGGGATTCGGAAGGAACTCACAGCCTCATATACACCTCAGCAGAATGGTGTATCCGAACGAAAAAACAGAACCATTCTTAACATGGTTAGAAGCCTGTTGGTAAGAGGGAGAGTTCCGAAGACGTTCTGGCCAGAAGCTGTAAACTGGGGTATTCATGTTCTGAACAGATGTCCAACCTTTGCTGTTCAAAACATGACCCCGGAGGAAGCTTGGAGTGGAAGAAGGCCTGTTGTAGACCATTTCAGAATTTTTGGATGCATTGCTTTTGCTCATGTTCCTGATGTGAAGAGGAAGAAGCTTGATGACAAGGCTGAGAAGTGTATCTTTCTTGGTGTAAGCGAAGTGTCCAAGGCATACAAATTATACAATCCTCTCACCAAGCAGATTGTGACCAGCAAAGATGTTGTTTTTGATGAAGAAAGAACATGGGATTGGAGCAGGAAGCAGCCTACCTTAAACCTTCTCGATGATGATGGTGATTGTGAGCAAGTGGCAGAAACTTCTGAGCATGAATCCACACCTCTAGTTCCTGAAAATCCATCAAGCACAACGTCTGCAGCTTCTGATGCTTCACCAAATGCCACTGATGTGAGTGAAACAGAAGCTGAGTCCCTTCGTCGTGTCCGAAAGAGGCCCGCCTGGATGATGGATTATGAGGTAACTGGTATTCCTGATGAGATTAATCATTTTGCTTTGTTTGCTGATTGTGATCCTACAAATTTCGAAAATGCTGTAAAGGAAGAGAAATGGCAAAAAGCTATGGACAATGAAATTGCGTCCATTGAGAAAAATGATACTTGGGAGTTGTGTGATCTCCCTGAAGGGCACAAAACCATTGGTGTAAAGTGGGTCTTCAAAACAAAGCTGAATGAAAAAGAT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_206298.p1 GENE.R_Transcript_206298~~R_Transcript_206298.p1 ORF type:3prime_partial len:880 (-),score=165.85,UBN2|PF14223.2|2.8e-37,rve|PF00665.22|3.6e-25,gag_pre-integrs|PF13976.2|2.8e+03,gag_pre-integrs|PF13976.2|1.1e-15,UBN2_2|PF14227.2|4.7e-10,UBN2_3|PF14244.2|6.1e-07,UBN2_3|PF14244.2|5.4e+03 R_Transcript_206298:2-2638(-)
MATENGNFVQAAIPRFDGHYDHWSMLMENFLRSKEYWTVVKSGVPEPSEGTTQTEAQKAELEARRLKDLKAKNYLFQAIDRPTLETILCKDTSKDIWDSMKKKYQGLARVKRAQLQALRKDFEVLEMKDKESVIGYFARTMELCNKMRFLGEMLYDAIIVQKILRSLTKDFNYVVCSIEESHDIDALTLDELQSSLLVHEQKMTKSTTAQEQALKASTNSHVSSTRGRGRGRFGGRGDRGNRDSSRNFKDKSKVECHRCHKFGHYAHECYTKLPIRKEKEESSNFAEKEEVETLLMAVQDGESSRSDVWYVDTGCSNHMSGSKSSFSYLNEDFRSSVSFGDSSTVKVMGKGDIKIRTKNGFVETISNVLFVPELKNNLLSAGQLQERGYIITIKSGACEIYDPKRGAVAVVPMNAKRLFPLKIDSIQSCFVAELKDPSWLWHYRYGHLSFGGLKTLQQKNMVTGLPQLTAPTRVCEVCVVSKQPRSSFPSGKSWRAKEVLQLVHFDICGPLKPHSNGGKKYFITFTDDFSRKTWVYFLTEKSEAFSTFKNFKARVENESGKTIKSLRTDRGGEYCSNEFESFSQEHGIRKELTASYTPQQNGVSERKNRTILNMVRSLLVRGRVPKTFWPEAVNWGIHVLNRCPTFAVQNMTPEEAWSGRRPVVDHFRIFGCIAFAHVPDVKRKKLDDKAEKCIFLGVSEVSKAYKLYNPLTKQIVTSKDVVFDEERTWDWSRKQPTLNLLDDDGDCEQVAETSEHESTPLVPENPSSTTSAASDASPNATDVSETEAESLRRVRKRPAWMMDYEVTGIPDEINHFALFADCDPTNFENAVKEEKWQKAMDNEIASIEKNDTWELCDLPEGHKTIGVKWVFKTKLNEKD

Click here to download the sequence:
Link to NCBI Protein BLAST