Transcript Information: R_Transcript_20667.p1


Annotated TAIR IDAT4G19490.1
Annotated Gene NameVPS54
Annotated Gene Symbol(s)ATVPS54, VPS54
Annotation TypeHomolog
Chromosome Positionchr4:10616017-10622934 | Forward length=1034
E-Value1E-150
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.5345323376758
Replicate 22.4875135031357
Replicate 34.1397718547263
Condition 2: 8 Hour
Replicate 13.7859670701564
Replicate 23.5023067944026
Replicate 35.066413406092
Condition 3: 24 Hour
Replicate 15.7164017996693
Replicate 23.6758764817629
Replicate 35.4939017788397


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_20667.p1 GENE.R_Transcript_20667~~R_Transcript_20667.p1 ORF type:3prime_partial len:498 (+),score=80.78,DUF2450|PF10475.5|9.4e-08 R_Transcript_20667:103-1593(+)
ATGGATTCACGGCCTTCCCTATCGGGAAGGTACAACGTCGAATCACCGACAACGAGCACTTCATCTCCATCGTCAATATCAAGGACGAACTCCTTAGCATCGTATTCGCATTCTCAATCGAGTAAGTCACTTTTCGAACACAACCTCTCTTCGATTCTCAACAACCCTCACTCTTCTCGATCCGGCACCGATCCTACCTCCTGGCTTGGCTGGTGGTCTTCTTCTACTTCCGTAACCCTACCCGAATTCGCTCCCATTAACACCTCCAAACCCGAACTGGACTCCACCCGCTCCAATTTCCAACCTTACTTATCTTCCATCTCTGAACACTACAACCGTTTCGAGGACATCCGGAACCACTCCATTAAAGAAGAACAAAACCTCGTCGTCGATGGTGACACCGATAACGAGGTCGGTGGTGGTGGCCAAGGTGAGGCACTAGTGGCTTGTTTAAGAGAAGTACCGGCATTGTACTTTAAGGAGGATTTTGAGCTAGAAGATGGAGCTAACTTCAAAGCGGCGTGTCCGTTTTCGACCATGAACGAGAATTTGGTCCTTCAAGAACGGTTGTCGCAGTACTTGGATGTGGTTGAGATGCATTTGGTGAAGGAGATTTCGTTGCGGTCGAATTCGTTCTTCGAGGCTCAACAACAGTTAGGGGATTTGAATGTTAAGATTGTGGATGGTTGTAAGAGGATTAGAGAATTGAAGGAGACTATTAGGCTTTTGGATAATGATATTGTTGGCTCTGCTAGACAGATTCAAGAGTTTAGTTCTATGAGGAATAACTTGTTGGCTCTTCAACAGAAGTTGCGGCTTATCTTGTATGTTAATCAGGCTCTCTCCGCCCTCAAACTGCTCGTACAATCTGCTGATTGTGCAGGAGCACTGGATGTTATTGACGATTTGCAGCATTTGCTGGATGGTGATGAGCTGACAGGTCTGCACTGCTTTCGTCATCTTCGTGACCATGTTGCTGCATCAATGGAATCCATAAACAGCATTCTTTCGGCAGAATTTATGCGTGCGTCCTTACATGATGCTGCGGATGTGGATGCTGTAATTGTATCAAAAGCGAAAGAAAAAGCTTCTGCACCCAGTAATGGAAGACTTGATGATGTGAAGTTGGATGAAGAAGAAATCTCTAACTACCGAGATCGTCTTCTGCCAATAATAATTGGATTGCTTAGAACAGCAAAGCTACCATCAGTCCTGAGGATATATCGTGATACACTTACTGCTGATATGAAAACGGCTATAAAAACTGGAGTAGCAGAGCTGCTGCCAGTTCTTGTTGCTCGACCACTGGAGTCAGATTTCTCGACTGGAGAGAGGACCAGTGATGCAGATGGTGGAGGCTTGTCACTTGCAAGCAGGCTGAGGAATTTGCCATCTGAAAGCTTCGTTCAATTATTAGCTGCTATTTTCAAGATTGTCCTGGCTCATTTAGTTCGGGCAGCTGAAGTCAAAAAGTCCATTGAGTGGATCATG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_20667.p1 GENE.R_Transcript_20667~~R_Transcript_20667.p1 ORF type:3prime_partial len:498 (+),score=80.78,DUF2450|PF10475.5|9.4e-08 R_Transcript_20667:103-1593(+)
MDSRPSLSGRYNVESPTTSTSSPSSISRTNSLASYSHSQSSKSLFEHNLSSILNNPHSSRSGTDPTSWLGWWSSSTSVTLPEFAPINTSKPELDSTRSNFQPYLSSISEHYNRFEDIRNHSIKEEQNLVVDGDTDNEVGGGGQGEALVACLREVPALYFKEDFELEDGANFKAACPFSTMNENLVLQERLSQYLDVVEMHLVKEISLRSNSFFEAQQQLGDLNVKIVDGCKRIRELKETIRLLDNDIVGSARQIQEFSSMRNNLLALQQKLRLILYVNQALSALKLLVQSADCAGALDVIDDLQHLLDGDELTGLHCFRHLRDHVAASMESINSILSAEFMRASLHDAADVDAVIVSKAKEKASAPSNGRLDDVKLDEEEISNYRDRLLPIIIGLLRTAKLPSVLRIYRDTLTADMKTAIKTGVAELLPVLVARPLESDFSTGERTSDADGGGLSLASRLRNLPSESFVQLLAAIFKIVLAHLVRAAEVKKSIEWIM

Click here to download the sequence:
Link to NCBI Protein BLAST