Transcript Information: R_Transcript_207524.p1


Annotated TAIR IDAT2G13770.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); Has 451 Blast hits to 352 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 8; Plants - 388; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:5736603-5737847 | Forward length=343
E-Value4.7E-39
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.26974819144905
Replicate 20.31029015393544
Replicate 30.22568214380446
Condition 2: 8 Hour
Replicate 10.12062002437067
Replicate 21.1015212729648
Replicate 30.26825040325695
Condition 3: 24 Hour
Replicate 10.33927793932568
Replicate 20.7605261686406
Replicate 30.97039084818757


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_207524.p1 GENE.R_Transcript_207524~~R_Transcript_207524.p1 ORF type:complete len:203 (+),score=36.76,Plant_tran|PF04827.10|6.9e-59,DDE_Tnp_4|PF13359.2|4.2e-07 R_Transcript_207524:289-897(+)
ATGCCGGGTTCTTGTAATGATATCAATGTTCTAGATCGGTCTCCAGTGTTTGATGACATCTTGAATGGTGTAGCCCCTTCTGTTTCAGATGTTGTAAATGGCAATGAATACCATATGGGGTACTATTTTACCGATGGTATATATCCAAAATGGGCAGCGTTCATGCCACATATTGTTGCTCCACAGACGGCTAAGCATAGGCTATTTGCTGAACATCAAGAAGGTGCAAGAAAAGACGTAGAGCGTGCTTTTGGTGTTTTACAAGCTCATTTTGCAATTCTACGCCAACCATCTCTTGCATGGGATAAAGATGTTTTGGGAAAGATAATGAAATCATGCATCATTATGCACAATATGATCGTGGAAGATGAGCGAGATGCAAATCCTGACCATGGTAATACAGAAGAATTTGATGAAGATAATCGGCAATTTCAACCGTCCACCAGCGATGTAAACATGGACGATGGTGGTTCCACTAGTCACTCTGCTCAACCAACTATATTGCTGACATATATGGATAGGAGGGCTCGTGTTCGTGATAGGCAAATCCATTTAGCTCTTAAGAATGACTTAGTTGAGCATATTTGGCAAAAATTTGGAAACAATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_207524.p1 GENE.R_Transcript_207524~~R_Transcript_207524.p1 ORF type:complete len:203 (+),score=36.76,Plant_tran|PF04827.10|6.9e-59,DDE_Tnp_4|PF13359.2|4.2e-07 R_Transcript_207524:289-897(+)
MPGSCNDINVLDRSPVFDDILNGVAPSVSDVVNGNEYHMGYYFTDGIYPKWAAFMPHIVAPQTAKHRLFAEHQEGARKDVERAFGVLQAHFAILRQPSLAWDKDVLGKIMKSCIIMHNMIVEDERDANPDHGNTEEFDEDNRQFQPSTSDVNMDDGGSTSHSAQPTILLTYMDRRARVRDRQIHLALKNDLVEHIWQKFGNN*

Click here to download the sequence:
Link to NCBI Protein BLAST