Transcript Information: R_Transcript_207979.p1


Annotated TAIR IDATMG00860.1
Annotated Gene NameDNA/RNA polymerases superfamily protein
Annotated Gene Symbol(s)ORF158
Annotation TypeHomolog
Chromosome PositionchrM:235916-236392 | Forward length=158
E-Value4E-33
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.61197974046433
Replicate 20.38258564898502
Replicate 30.73461840687369
Condition 2: 8 Hour
Replicate 10.41047732783283
Replicate 20.5867286780486
Replicate 30.84672236130085
Condition 3: 24 Hour
Replicate 10.87012097364476
Replicate 20.4501073242975
Replicate 30.62217236354883


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_207979.p1 GENE.R_Transcript_207979~~R_Transcript_207979.p1 ORF type:complete len:1372 (+),score=273.18,RVT_1|PF00078.23|2.3e-28,RVT_1|PF00078.23|3.3e+03,Chromo|PF00385.20|5.9e-10,Retrotrans_gag|PF03732.13|3.9e-08,Retrotrans_gag|PF03732.13|3.2e+02,Retrotrans_gag|PF03732.13|1.6e+04,gag-asp_proteas|PF13975.2|4.2e-09,rve|PF00665.22|1.8e-08 R_Transcript_207979:331-4446(+)
ATGTGTGGTAGAGCTGCTTTATGGTTCAATAGTTATATTATGACAAGGCCTAATCTCTTGTGGGAGGAATTTGTTGGGGATGTACTGGTCAGATTTAAGTCTGATAGGGAGGATACTTTAGTGGAAAGATTCAATAGATTGCAGCAAATAGGATCATTGGAGGAGTATGTAGATGAGTTTGAAGGCTTGAAGGCACAGATGTTACATAAGAATCCATTGCTTCCTGCAAATTTCTTTTTGGACAGTTTTATTGCTGGATTAACACCAACTGTTAAACCTTTTGTCAAAGCCTTTTTCCCTGCTACCATTACTGCTGCTATTCAATATGCTAGGTTGCAAGAAGAAACTGTCACTGCTGTAACCACTAAACCACCACAAAAGAACTATACTAACACCACAAATAGCCAACCCAGAACCTTCAATACCTATTCCTCACAGAACTCAAACATATCCCAACCCTCTTTTACTCCTAAACCACCACTTTTACCAAACCCAAATCATCTAAACAATCCTAATACATCTTTTAAGCCAAGATACATTTTAGCTGCTGAGAGAAATGAAAAAAGATCTAAGGGTCTTTGTTATTACTGTGATCAGCCTTTTGAAAAGGGACATAAGTGTGCCAATAAGAAGACTCAGTTATTCTTGGTAGAAGTACCTGGGTTAGAAGATGAGCCTGGAAAGGAAGAAGGGGAGATGGATTTTGATTTAACAGAAGAGTATGAAACACCTATATCTGAACCTGTGATTTCTGTTAATGCATTGAATGGATGCCAGGGAAATAAGACCATGAGAGTAACTGTATATGTGGGACAAAAAGCTTTACATTCCCTCATTGACTCGGGGAGTACTCATAATTTCCTGGATGTCAACTTAGCTCATAAACTGAATTGTAAAATTGTCCAAATACCACCTCAGCCAGTAACTGTGGCAGATGGGGCTCAATTGCCTTGTCAGTTTATGATTAAGAATTTTACATGGAGGTTGCAGAAGACTTTCTTCACATCTGATGTGTTGCTATTACCTTTGGGAAGCTGTGATATGGTACTTGGTACTCAGTGGTTAAGTACTTTGGGAGATATAAGCTGGAGCTTTGAGAATTTGACAATGAAATTTTGTTTCCAAGGAAGGCCTTATGTGTTAAGGGGGCTACAATCTAAACCCACACAAGTTGTTTCTGGTTCACCTAAGGACTTGAATGATGCTGCACATTTGTGTTTGCTCCAACTGATGCCTGCCAGTAATTCCCTAGAAATACCAATGAACAACTTTGAGACTTTTTGTCGTTCACTGGAACTGGAACAACCTCCTCCTCAGGTTCAGAACCTCTTGTCTCAGTTTCAATCCATCTTTGAGGAACCAAAGACATTGCCTCCTAGTAGGGGTACCTTTGACCACAAAATTCCTTTGATGGCTGGAGCTGACCCAGTCAGTGTTAGACCATACAGATATCCTATTAAACAAAGGGATATAATTGAAGAACAGGTGCAAGATATGCTGGACAGGGGGATCATTCAACACAGCTCCAGTCCCTTTGCTTCTCCAGTGGTTCTGGTAGGGAAAAAGGATGGAACCTGGAGACTTTGCATAGACTACAGGGCCCTCAACAACCTTACCATCAAAGACAAGTTTCCCATTCCAGTAGTGGAGGAGCTGATTGATAAATTAGCAGGATCTTCCATCTTCAGCAAAATTGATCTCAGATCAGGATACCACCAGATCAGAATGCACTCTCAGGACATCTACAAAACAGCATTTAAAACACATTATGGTCACTTTGAATTTTTGGTAATGCCTTTTGGACTCACTAATGCTCCTGCTACATTTCAGAGCTATATGAATTTTGTTTTTAAACCATTTCTTAGAAAATTTGTGTTAGTGTTCTTTGATGATATTTTGGTGTATAGTCCTAACATTGACAGCCATCTAGAGCATTTAAAACAAGTTTTCCAGATTATGCAACAACATCATCTCTATGCCAAACAAAGTAAATGTATCTTTGGAGGAGACAAAGTGGAATACTTGGGGCATTACATATCCAGAGAAGGAGTCCAAACTGATCCCAAGAAAGTGGAGGCTGTGAGGGGTTGGCCTGTACCTTCTACAGTTAAACAACTAAGGAGTTTCTTGGGTATGACTGGTTACTATAGGAGATTCATCAGACATTATGCTCATATTACTCAACCCCTTACTCAACTACTTAAAAAGGGGGAGTTTCTATGGTCTGCACATGCACAAGAAGCTTCTGATAAGTTGAAGGAGGCCCTTACAACTGCTCCTGTACTTGCTTTACCAGACTTTTCTAAAGTCTTTGTGGTGGAGACTGATGCTTCTCAGGGGGGTATTGGGGCTGTACTTATGCAAGATAATCATCCCTTGGCTTTTATCAGCAGAGCATTGGGCCCTAAATGGGTGAATTTGTCTGTTTATGAAAAAGAGCTCTTAGCTCTAGTGTTTGCTGTCCAAAAATGGGAGCAGTACCTAAGTGGAACTCATTTCATCATCAAAACTGATCAGCAAAGTTTAAAGTGGTTGCTTCAACAAAGGGTTTCTACCCCTTTTCAACAATTTTGGCTGTCCAAACTTATGGGGTTCTCTTATGAAATCCAGTATAAGAAGGGTAAGGATAACTTGGTGGCTGATGCTTTATCCAGGGTTTCAAATGCTGAACTACTTTGTATGGCTGTTTCTTCAATTCAATCTGATCTCATGGATCAAATTAATGCCAGTTGGTTGAATGATATTAATTTGCAACATGTCATTCAGCAGCTACAGCAAGGTGTACCCCAAGCTCATTTCTCTCTGGTTAATGGTGTTTTGAGGAGGAAAGGGAAAATTGTAGTAGGGTCTGACATGGAGTTGAGGAACAAGCTCTTGGGCTGGGCTCATGATTCTGCAATGGGAGGGCATTCAGGCAGGGATGCTACTCTCCAAAGACTTAAGGGTCTTTTCTATTGGAAGGGTCTTACCAAATTTGTTGCTCACTATATCAGAAATTGTGTTACTTGCCAAGCCAATAAGGCTGAGAATTCTCCTTATCCTGGTTTGTTGCAACCATTACCAATCCCACAGGATGTTTGGGCAGATATCTCCATGGATTTTATTGAAGGTTTACCAAAATCCAATGGTAAAGAGGTTATCTTTGTGGTGGTGGATAGACTCAACAAGTATGGTCATTTCTTGGCTCTTAAACATCCCTATACAGCAGCAGATGTAGCACAAATATATCTGGACCATATTTTTAAACTTCATGGTTGGCCAAGGAGTATTGTGAGTGATCGCGATCCTGTTTTTCTGAGTCAATTTTGGAAGTCTTTGTTTGCTGTCCAAGGAGTAGACTTGTTACTTTCTTCTGCCTATCACCCTCAAACTGATGGCCAAACAGAAGTTCTGAATAAATGCTTAGAGTGCTACCTTAGATGCATGTGTGGTACTGATCCCACTACTTGGAGTTCATGGTTGCCCCTTGCTGAATGGTGGTATAACACCACTTACCACTCAGCCACTCACTTGACCCCGTATGAAGTTGTCTACAACCAACCTCCACCTATTCATTTGCCCTATGTCCCTGGGGAATCAAACATAGAACCTGTGGACAGGTCTCTCCAAGGGAGGGAGGCAATGATACAAGCATTAAAGCAACACCTTCAACAAGCGGATCAAAACAGGTCAGAAAGAGAATTCGAAGTGGGAGAATGGGTATGGCTCAAATTGCAAGCTTATAGACAATTAACACTACGAAGGAGGTTTAATCAGAAGCTCAGTTCAAAGTACAGTGGACCTTTTCAGGTTATTGAGAAAATTGGGAAGGTTGCGTACAAACTCAGATTGCCTAGTTCAGTCCAAATACACAATGTGTTCCATGTATCTCTCCTCAAGGCATTCAAGGGAAATTTGCCTGCTGCTCCTCACATACCAGAATGGCTGCAAGGAAATCCGACTGATCATACACTGGTTCCCAGAGCAATCTTAGACAGGGGAATTGTCAAGCATCAAAATGCAGCTAAGGTCCAATATTTGATTCAGTGGCAGGGACAGACCCCAGATAAGGCCACTTGGGAGTTGGCTGAAGACTTGGAGCAGAGGTTTCCTTCATTCTTTACACAGGAGACTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_207979.p1 GENE.R_Transcript_207979~~R_Transcript_207979.p1 ORF type:complete len:1372 (+),score=273.18,RVT_1|PF00078.23|2.3e-28,RVT_1|PF00078.23|3.3e+03,Chromo|PF00385.20|5.9e-10,Retrotrans_gag|PF03732.13|3.9e-08,Retrotrans_gag|PF03732.13|3.2e+02,Retrotrans_gag|PF03732.13|1.6e+04,gag-asp_proteas|PF13975.2|4.2e-09,rve|PF00665.22|1.8e-08 R_Transcript_207979:331-4446(+)
MCGRAALWFNSYIMTRPNLLWEEFVGDVLVRFKSDREDTLVERFNRLQQIGSLEEYVDEFEGLKAQMLHKNPLLPANFFLDSFIAGLTPTVKPFVKAFFPATITAAIQYARLQEETVTAVTTKPPQKNYTNTTNSQPRTFNTYSSQNSNISQPSFTPKPPLLPNPNHLNNPNTSFKPRYILAAERNEKRSKGLCYYCDQPFEKGHKCANKKTQLFLVEVPGLEDEPGKEEGEMDFDLTEEYETPISEPVISVNALNGCQGNKTMRVTVYVGQKALHSLIDSGSTHNFLDVNLAHKLNCKIVQIPPQPVTVADGAQLPCQFMIKNFTWRLQKTFFTSDVLLLPLGSCDMVLGTQWLSTLGDISWSFENLTMKFCFQGRPYVLRGLQSKPTQVVSGSPKDLNDAAHLCLLQLMPASNSLEIPMNNFETFCRSLELEQPPPQVQNLLSQFQSIFEEPKTLPPSRGTFDHKIPLMAGADPVSVRPYRYPIKQRDIIEEQVQDMLDRGIIQHSSSPFASPVVLVGKKDGTWRLCIDYRALNNLTIKDKFPIPVVEELIDKLAGSSIFSKIDLRSGYHQIRMHSQDIYKTAFKTHYGHFEFLVMPFGLTNAPATFQSYMNFVFKPFLRKFVLVFFDDILVYSPNIDSHLEHLKQVFQIMQQHHLYAKQSKCIFGGDKVEYLGHYISREGVQTDPKKVEAVRGWPVPSTVKQLRSFLGMTGYYRRFIRHYAHITQPLTQLLKKGEFLWSAHAQEASDKLKEALTTAPVLALPDFSKVFVVETDASQGGIGAVLMQDNHPLAFISRALGPKWVNLSVYEKELLALVFAVQKWEQYLSGTHFIIKTDQQSLKWLLQQRVSTPFQQFWLSKLMGFSYEIQYKKGKDNLVADALSRVSNAELLCMAVSSIQSDLMDQINASWLNDINLQHVIQQLQQGVPQAHFSLVNGVLRRKGKIVVGSDMELRNKLLGWAHDSAMGGHSGRDATLQRLKGLFYWKGLTKFVAHYIRNCVTCQANKAENSPYPGLLQPLPIPQDVWADISMDFIEGLPKSNGKEVIFVVVDRLNKYGHFLALKHPYTAADVAQIYLDHIFKLHGWPRSIVSDRDPVFLSQFWKSLFAVQGVDLLLSSAYHPQTDGQTEVLNKCLECYLRCMCGTDPTTWSSWLPLAEWWYNTTYHSATHLTPYEVVYNQPPPIHLPYVPGESNIEPVDRSLQGREAMIQALKQHLQQADQNRSEREFEVGEWVWLKLQAYRQLTLRRRFNQKLSSKYSGPFQVIEKIGKVAYKLRLPSSVQIHNVFHVSLLKAFKGNLPAAPHIPEWLQGNPTDHTLVPRAILDRGIVKHQNAAKVQYLIQWQGQTPDKATWELAEDLEQRFPSFFTQET*

Click here to download the sequence:
Link to NCBI Protein BLAST