Transcript Information: R_Transcript_208942.p1


Annotated TAIR IDAT3G07530.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Beta-Casp domain (InterPro:IPR022712); BEST Arabidopsis thaliana protein match is: cleavage and polyadenylation specificity factor 73 kDa subunit-II (TAIR:AT2G01730.1); Has 624 Blast hits to 615 proteins in 160 species: Archae - 54; Bacteria - 6; Metazoa - 333; Fungi - 44; Plants - 93; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:2400793-2404280 | Forward length=699
E-Value9E-08
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.6161526419726
Replicate 25.7442708686099
Replicate 33.4576207692306
Condition 2: 8 Hour
Replicate 15.7749681479352
Replicate 22.9533240167604
Replicate 34.9660066791625
Condition 3: 24 Hour
Replicate 15.1979940892915
Replicate 23.3290956815966
Replicate 36.1946334019521


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_208942.p1 GENE.R_Transcript_208942~~R_Transcript_208942.p1 ORF type:5prime_partial len:106 (-),score=12.95 R_Transcript_208942:220-537(-)
GAGGAGGATATAAACATTACGAGATTGAAGGGTGAGCTGAACGTTGAGCATGGAAAACATTGGTTACTCCCGGGTCCTGAGTCCAAGGAGATCTCAATCGATCTGGGAACGCTTTCAACGGTGTTGAATAGCAAGGGTATTAAAACATCTCTACGAAAATCCACATGTGATGGGTCTAGCACCTTTATGTTAGATGTTGATGAACCTAGCAAGGCTGTGATAGAAGTGCACCCAAAAAGGATAGTGATAAGCACACAAGACAAGCACTTGGCCTCCTGCATTTTTGAAGTTGTGGATAGCCTTCTTAGTGCCATGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_208942.p1 GENE.R_Transcript_208942~~R_Transcript_208942.p1 ORF type:5prime_partial len:106 (-),score=12.95 R_Transcript_208942:220-537(-)
EEDINITRLKGELNVEHGKHWLLPGPESKEISIDLGTLSTVLNSKGIKTSLRKSTCDGSSTFMLDVDEPSKAVIEVHPKRIVISTQDKHLASCIFEVVDSLLSAM*

Click here to download the sequence:
Link to NCBI Protein BLAST