Transcript Information: R_Transcript_209303.p1


Annotated TAIR IDAT5G28780.1
Annotated Gene NamePIF1 helicase
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:10812907-10814173 | Reverse length=337
E-Value7.8E-71
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.33885447316928
Replicate 20.33781176412361
Replicate 30.25514930490764
Condition 2: 8 Hour
Replicate 10.27273859470941
Replicate 20.44278973942942
Replicate 30.38190269869626
Condition 3: 24 Hour
Replicate 10.53984942738413
Replicate 20.49133002479009
Replicate 30.51468612506318


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_209303.p1 GENE.R_Transcript_209303~~R_Transcript_209303.p1 ORF type:5prime_partial len:808 (+),score=120.51,PIF1|PF05970.10|9.2e-136,Herpes_Helicase|PF02689.10|1.6e-05 R_Transcript_209303:1-2424(+)
AAGGGGCCAGATAGAACCACAATACTCATAAGGAAAAAATCCAAATCCGGTGAAAATGGTGCACCAGCAGGTGATGATGAGATACAAAATTACTTGGATTGTAGATACTTATCTGCTTGCGAAGCAATTTGGAGGATATTCCAGTTTGTCATACATCATCGAACCCCTGCTGTTATTCGTCTCCATGTACATTTAGAACACGAACAAAGCCTCACATTAAGAGATGACCAAAGTTTAGCTGATGTCGTAGGGAGAGAAGAGGGAAGGAAAACCATGTTCACGCAATGGATGAAGACCAATAAGATTTATGAGGAAGCAAGAAAGCTCACATATGCTGAGTTCCCCTCAAAATTTGTTTGGAATGAGGCAGAAAAGATATGGGACAACGAGAGCCAGAAGTGGAAGACCACAAAAACATGGACTCCTCGAAAACAAGGCATCTGCTTAGGAAGAATAGCCTATGTGCACCCAACAGCAGGCGAAAGGTACTACCTAAGGTTGTTGTTGAATTCGGCAAGGGGCCCAACCAGTTACAAAGACATAAAAACAGTGAATGGGGTAACATATCCCACCTTCAAAGAAGCTTGCTATGTTCTTGGTCTGTTGAATGATGACAAAGAATGGATTGATGCAATTCAAGAAGTAGATATTTGGGCATCTCCAAATCAGTTAAGAGAGCTATTTGTTACTATCTTACTATTTTGTGAGGTAACTGACCCCCGACAATTTTGGGAGACGAGTGTTGGAATGCTATGTGAAGATATTCTACACAAAAGGAGAAAGACTCTAGCTGATTTCAGTTCTCTACCACAACCCAACTTCCAAGAAGTTGCTCATCTAGAGAACAAATTGATACGAGAGGAACTCACCTATGACGTTATTGCCCTAAAGCTCGAACACAAAAAATGCAAAGAATTGCTCAACCGCCAACAACTAGAGGTATATGATGCTGTAATTCATGCTGTTGAGAAGCAGGAAGGAGGTGTATTCTTTGTGTACGGACATGGTGGAACTGGCAAGACTTTTTTGTACTCCACAATAGCATCAAAACTTAGGAGTGAAAGGAAGATAGTACTCACCGTTGCATCATCTGGAATTGCATCTCTCCTACTCCCAGGTGGTCATACAGCCCATAGCAGGTTTGATATTCCTATTGAACTTTTTGATGGGGCAACTTGCGGGATTCGGCAGCAAACGCAGCTAGCGGAGCTTATAGTAAGATCCTCTCTTATTATATGGGATGAAGCACCTATGGACCACAAATTTGCATTTGAGGCTGTTGATAGAACATTGAGAGATATTGTTGGGTTCAGAAACAAAGACGCTTCCATGAAACTCTTTGGCGGAAAAGTTGTCTTATTGGGTGGAGATTTCAGACAGGTGCTGCCTGTGATTCCCAAAGGCAAAAGACAAGATATTGTGCAAGCAACTCTCAATAGATCTTATATTTGGGAGGAGTGCAAAGTTTTCAGGCTATCACAGAGTATGAGAGTACAAAGCCAAACAGCAGAAGGCACACTTGATAAAAGGAAGGAAGATTTCAACACTTGGATCCTTGATATTGGAAATGGAATTGCTCAAGCAATCTCAAGGCATGACGAGGAAGAACCGACATGGATTCAAATTCCTATAGAGTATTTGATTAAAAGTGAAGACAATCATGTTAAGGACATAGTGAAGAGTACACATCCTCATTTTCATACAAGGTGGTCTGATGAAGATTATCTAAGGGAAAGAGCAATATTGACTCCATTAAATGAAATTGCCAATGATATAAATGATTACATGTTCAACCTAATTGATGGAGAGTCCATGACATATAAAAGTTGTGATGAAATATGCCAAGGGTCAACAGACACTGATGAACAATATCTATCATATCCTACAGAATTCCTTAATACATTTACATTCTCAGGAATGCCAAACCATGTTCTAAAGCTTAAGGTAGGAATGCCAGTGATGTTATTGAGGAACATCAACCCCACTTTTGGATTTTGTAACGGGACAAGATTGATAGTTTCGAAATTGGGAAGATATATTGTGCAAGCAAAGATTATTACTGGGAGTAATATTGGAGCAAAGGTGGCAATTCCAAGAATAATAGTATCATCAAATGATGGAAAATTTCCATTTGTCTTGAAAAGGAGGCAATATCCTCTTCGAGTATGCTATGCAATGACAATCAACAAGAGTCAAGGACAATCACTCAAGATGGTTGGAGTATATCTCCCGAATCCAGTTTTCAGTCATGGACAACTCTATGTTGCTGCTTCAAGAGTTACTTCTCCGGAAGGATTGAAATTTCTCATAAAAGAAACTGATGAAAAATTTCAAGGTTGCACAAGAAACATTGTCTACAAGGAAGTGTTCAACAATATTCCCAAGGAACATAAAGTGCCAGAATGTCAACCAAGTGTCCAATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_209303.p1 GENE.R_Transcript_209303~~R_Transcript_209303.p1 ORF type:5prime_partial len:808 (+),score=120.51,PIF1|PF05970.10|9.2e-136,Herpes_Helicase|PF02689.10|1.6e-05 R_Transcript_209303:1-2424(+)
KGPDRTTILIRKKSKSGENGAPAGDDEIQNYLDCRYLSACEAIWRIFQFVIHHRTPAVIRLHVHLEHEQSLTLRDDQSLADVVGREEGRKTMFTQWMKTNKIYEEARKLTYAEFPSKFVWNEAEKIWDNESQKWKTTKTWTPRKQGICLGRIAYVHPTAGERYYLRLLLNSARGPTSYKDIKTVNGVTYPTFKEACYVLGLLNDDKEWIDAIQEVDIWASPNQLRELFVTILLFCEVTDPRQFWETSVGMLCEDILHKRRKTLADFSSLPQPNFQEVAHLENKLIREELTYDVIALKLEHKKCKELLNRQQLEVYDAVIHAVEKQEGGVFFVYGHGGTGKTFLYSTIASKLRSERKIVLTVASSGIASLLLPGGHTAHSRFDIPIELFDGATCGIRQQTQLAELIVRSSLIIWDEAPMDHKFAFEAVDRTLRDIVGFRNKDASMKLFGGKVVLLGGDFRQVLPVIPKGKRQDIVQATLNRSYIWEECKVFRLSQSMRVQSQTAEGTLDKRKEDFNTWILDIGNGIAQAISRHDEEEPTWIQIPIEYLIKSEDNHVKDIVKSTHPHFHTRWSDEDYLRERAILTPLNEIANDINDYMFNLIDGESMTYKSCDEICQGSTDTDEQYLSYPTEFLNTFTFSGMPNHVLKLKVGMPVMLLRNINPTFGFCNGTRLIVSKLGRYIVQAKIITGSNIGAKVAIPRIIVSSNDGKFPFVLKRRQYPLRVCYAMTINKSQGQSLKMVGVYLPNPVFSHGQLYVAASRVTSPEGLKFLIKETDEKFQGCTRNIVYKEVFNNIPKEHKVPECQPSVQ*

Click here to download the sequence:
Link to NCBI Protein BLAST