Transcript Information: R_Transcript_211846.p1


Annotated TAIR IDAT5G35695.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:13869120-13869941 | Forward length=211
E-Value4E-24
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.10737035855717
Replicate 20.49403059803054
Replicate 30.26949103054297
Condition 2: 8 Hour
Replicate 10.14403449968968
Replicate 20
Replicate 30.21354836023985
Condition 3: 24 Hour
Replicate 10.67522962434424
Replicate 20.25947363400679
Replicate 30.77250722424343


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_211846.p1 GENE.R_Transcript_211846~~R_Transcript_211846.p1 ORF type:5prime_partial len:170 (+),score=22.41,DDE_Tnp_4|PF13359.2|9.1e-23 R_Transcript_211846:1-510(+)
ACTTATCCAACGCAAAATGTGATGGCAATTTGTGACTTTGATATGTTGTTCACCTTTGTTCAAACTGGTTGGGAGGGTTCCACTCATGACACACGCATTCTTATCGCTATGTTGGAAAAGTTTAAAGGCAAGGAGATATTTCCATTTGCTCCTGAAAGAAAGTATTATCTTACGGATGATGTTTATCCAAACATGAAAGGGTTTCTTGCTCCTTTTAAGGGAAAAACGCTTCGCTATCATCTTCCAGACTTGAAACGCTCAAGCCAACCTCCAACTGGATATCATGAAGTCTTTAATTTTGCTCATGCATCACTTCGTAATGTAATTGACCGGGCATTTGGATGGAAAAATAGGTGGAGGATATTGTTTAAGATGCCAAGTTATAAATTCTCTATGCAATGCAAAATTGTGGCAACTACAATGGCTCTACATAATTTTATTAGAAAGTATGTAATTAATGATGAAGAGTTTGACAAGTGTGATGAAGACCTCAACTACATGCCCCATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_211846.p1 GENE.R_Transcript_211846~~R_Transcript_211846.p1 ORF type:5prime_partial len:170 (+),score=22.41,DDE_Tnp_4|PF13359.2|9.1e-23 R_Transcript_211846:1-510(+)
TYPTQNVMAICDFDMLFTFVQTGWEGSTHDTRILIAMLEKFKGKEIFPFAPERKYYLTDDVYPNMKGFLAPFKGKTLRYHLPDLKRSSQPPTGYHEVFNFAHASLRNVIDRAFGWKNRWRILFKMPSYKFSMQCKIVATTMALHNFIRKYVINDEEFDKCDEDLNYMPH*

Click here to download the sequence:
Link to NCBI Protein BLAST