Transcript Information: R_Transcript_21242.p1


Annotated TAIR IDAT1G47370.1
Annotated Gene NameToll-Interleukin-Resistance (TIR) domain family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:17365898-17368703 | Reverse length=363
E-Value5E-05
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 113.518904236516
Replicate 212.013925906652
Replicate 315.005750564325
Condition 2: 8 Hour
Replicate 146.680271944882
Replicate 274.376836926296
Replicate 394.301014533187
Condition 3: 24 Hour
Replicate 137.628705429365
Replicate 234.3802565059
Replicate 352.495377283815


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_21242.p1 GENE.R_Transcript_21242~~R_Transcript_21242.p1 ORF type:complete len:374 (+),score=55.22,Retrotrans_gag|PF03732.13|1.1e+03,Retrotrans_gag|PF03732.13|8.2e-20,zf-CCHC|PF00098.19|1.2e-05 R_Transcript_21242:150-1271(+)
ATGCCGCCAAGAGGACGTCGTGGAGGAGTTCACCAATCTCGTCCTGTTCATGATGCTATTTTAGCAGACATGCAACGAGAAATTCAAAGACTCCAACAACGTCTTGCTCAATATGAAGCATCTGCGGGTACTTCTCACGAATCAGAAGGTGAATCATCTGATAATAATATCGAGCCTAATGAGGATGAAAATCCTTTTAGTCAATCAAGAAATGATTCGTCAAGTACAGAAGAGTCAACTTCACAGCACGTTCGTCGCCCCCAGTTCAATGAACGAGAATTGGGAATAAAAATTGAAATTCCCGATTTTGAAGGAGGCGTTCATCCTGAAGAATTTATTGAATGGCTCCATACGGTAGAACGGGTTTTTGATCTTAAAAACATTCCCGATGATCGTAAGGTCAAATTGGTAGCCATTAAACTCAAAAGGCATGCATCCATTTGGTGGGAGAATCTGAAGCGCCAAAGAGAAAGAGAAGGTTGTAGAAAAATCCGGACATGGGAAAAAATGAAGCGTGAGCTCAAACGCAAATTTTTACCCAGTCATTATCGTCAGGATATTTTCCTCAAGTTTCACAATCTCAAACAAGGAGGAAAATCTGTTGCTGAATATGCCGCCGAATTCGAAGATTTGGCAATGAAGTGTGATAATTCAGAACCAGAAGAGCAAGTCATTGCCAGATTCCTTGCAGGTCTAGATCTGAAAATCGCTAATGTGGTACAACTCCAACAATATTGGACGTTTAACGACGTCATAAAATTATCCTTAATAGTTGAAAAACAACAAAAGGATAAAGAAGTATTCAAAGAAACTTTTAAAGATCCACCCACATATGGGGATGATTCCGCAAGCCCACCATTAAAAGCCACTACCAGCATTCCACCAAAGAAAGATGAAGTTCCAGCTAGGACAAGCAAGCCTACATCAGGAAGCTCCCGCATGAGAAAATGCTTTAAATGTCAAGGCTTTGGACATATTGCATCTGAGTGTCCCAATACTAGAATAATCTCCTTTGTTGAGGAAGAAATACCGGTAGAAGAAGCGACCATTGGAGAAGAAGTTTTTAAAGATGAGAAAGAGCAAAGACGCGAGGTCGAGTCTTCTCCAACAAGGGGAGTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_21242.p1 GENE.R_Transcript_21242~~R_Transcript_21242.p1 ORF type:complete len:374 (+),score=55.22,Retrotrans_gag|PF03732.13|1.1e+03,Retrotrans_gag|PF03732.13|8.2e-20,zf-CCHC|PF00098.19|1.2e-05 R_Transcript_21242:150-1271(+)
MPPRGRRGGVHQSRPVHDAILADMQREIQRLQQRLAQYEASAGTSHESEGESSDNNIEPNEDENPFSQSRNDSSSTEESTSQHVRRPQFNERELGIKIEIPDFEGGVHPEEFIEWLHTVERVFDLKNIPDDRKVKLVAIKLKRHASIWWENLKRQREREGCRKIRTWEKMKRELKRKFLPSHYRQDIFLKFHNLKQGGKSVAEYAAEFEDLAMKCDNSEPEEQVIARFLAGLDLKIANVVQLQQYWTFNDVIKLSLIVEKQQKDKEVFKETFKDPPTYGDDSASPPLKATTSIPPKKDEVPARTSKPTSGSSRMRKCFKCQGFGHIASECPNTRIISFVEEEIPVEEATIGEEVFKDEKEQRREVESSPTRGV*

Click here to download the sequence:
Link to NCBI Protein BLAST