Transcript Information: R_Transcript_212752.p1


Annotated TAIR IDAT1G68930.1
Annotated Gene Namepentatricopeptide (PPR) repeat-containing protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:25918314-25920545 | Forward length=743
E-Value5.5E-298
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.65677820526724
Replicate 20.2518296901505
Replicate 30.58382989375501
Condition 2: 8 Hour
Replicate 10.29368353759814
Replicate 20.23467192337076
Replicate 30.68034522565169
Condition 3: 24 Hour
Replicate 11.1014240349123
Replicate 20.4959953273743
Replicate 31.1813453804023


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_212752.p1 GENE.R_Transcript_212752~~R_Transcript_212752.p1 ORF type:complete len:667 (+),score=116.90,PPR|PF01535.16|6.9,PPR|PF01535.16|2.1e-05,PPR|PF01535.16|7.8e+02,PPR|PF01535.16|4.5,PPR|PF01535.16|1.4e-05,PPR|PF01535.16|0.091,PPR|PF01535.16|11,PPR|PF01535.16|0.091,PPR|PF01535.16|5.9e-07,PPR|PF01535.16|2.5e+03,PPR|PF01535.16|2.2e-05,PPR|PF01535.16|1.9e-08,PPR|PF01535.16|0.036,PPR|PF01535.16|0.0001,PPR|PF01535.16|2.8e+03,PPR|PF01535.16|6.7,PPR_2|PF13041.2|1e+03,PPR_2|PF13041.2|7.3e-07,PPR_2|PF13041.2|5.9e+02,PPR_2|PF13041.2|0.0042,PPR_2|PF13041.2|0.0004,PPR_2|PF13041.2|1.3,PPR_2|PF13041.2|2.7e-12,PPR_2|PF13041.2|0.012,PPR_2|PF13041.2|1.4e-11,PPR_2|PF13041.2|69,PPR_2|PF13041.2|0.096,PPR_2|PF13041.2|1.7e+02,PPR_1|PF12854.3|0.052,PPR_1|PF12854.3|2.5e+03,PPR_1|PF12854.3|0.00064,PPR_1|PF12854.3|2.4,PPR_1|PF12854.3|4.4e+02,PPR_1|PF12854.3|1.3,PPR_1|PF12854.3|0.019,PPR_1|PF12854.3|8.3e+02,PPR_1|PF12854.3|0.17,PPR_1|PF12854.3|1.4e-05,PPR_1|PF12854.3|0.64,PPR_1|PF12854.3|0.058,PPR_1|PF12854.3|2.5e+03,PPR_3|PF13812.2|1.6e+03,PPR_3|PF13812.2|0.014,PPR_3|PF13812.2|2.1e+03,PPR_3|PF13812.2|0.4,PPR_3|PF13812.2|32,PPR_3|PF13812.2|9.8,PPR_3|PF13812.2|2.9e+03,PPR_3|PF13812.2|0.079,PPR_3|PF13812.2|0.22,PPR_3|PF13812.2|0.00016,PPR_3|PF13812.2|22,PPR_3|PF13812.2|0.66,PPR_3|PF13812.2|1.1e+03,DYW_deaminase|PF14432.2|2.2e-35,TPR_14|PF13428.2|1.2e+04,TPR_14|PF13428.2|44,TPR_14|PF13428.2|9.7e+03,TPR_14|PF13428.2|2.2e+03,TPR_14|PF13428.2|7.9e+02,TPR_14|PF13428.2|4.8e+03,TPR_14|PF13428.2|0.79,TPR_14|PF13428.2|6.6e+03,TPR_14|PF13428.2|1.3e+03 R_Transcript_212752:304-2304(+)
ATGCTCTCTGCTTATTCAAATTCGGGTCATCTACGTGGTATGCTGGAAATATTTCAATCCATTCCTGTTAAGGATGGCATCTCATGGAACGCGTTTATTTCGGGGTATGCCAACCATGGAAGATTTCATGATGCTTTGAGGGCTTATAGAATAATGTTGGAGGAAGGAACCATGAATTTGAATAGGATAACTTTTTCAACAATGCTTATACTTTCTTCAGAGATGGGTTCAGTTGATTTGGGTAGGCAGCTTCATGGGCAAGTTCTGAAATTCGGGTTTATTTCCTATATGTTTGTGGCTAATCCCTTGGTGGATATGTACTCAAAGTTGAGATTTGTGTATGATGCGAAACGGGTCTTTGAAGAAGCTCCAGAAAGGAATTTGGTTATGCACAATACAATGATTTCAGGGTTTTCGCGTTGTGGGATGTTTGAAGAGTCATGCCGGTTACTAAGGAGTATGCCGGATAGAGATTCAATTACATGGACAAGTGTTATTACAGGATTAACTCAGAATGGGTTGGATAGGGAAGCTGTTGTGTTGAGAGAGATGAGGCAGGAAGGCTTTGATATGGACCAATTCACCTTTGGAAGTGTCTTGGCTGCTTGTGGGAGAATGGGAGCCTTGAAAGAAGGGTTGCAACTTCATGCTCATATAATCCAAACAGGTTACCAAGATAATATTTTTGTTGGAAGTGCACTTATTGACATGTATTGCAAGTGTAATAGCATAAGATGTGCAGAGATAATATTCAATGGGATGAGACACAAGAATACTGTCTCATGGACAGCAATGCTAGTTGGATATAGTCAGAACGGACATAGTGAAGAAGCTATTAGGATTTTCTGCAAGATGCAGAAAAACGCAATTGAACCAGACGATATTACACTTGGAAGTGTCATTAGCTCGTGTGCAGATTTAGCAAGTTTAGAGGAGGGTATCCAATTTCATACTCGAGCTCTAGTCTCTGGTATTATATGTTCTGTTGCTGTTTCTAATGCACTCATTACCTTGTACGGAAGATGTGGAATGATAGAAGATTCCTTGAGGTTGTTCAAAGAGATGAAAGTCAAGGATGAAATTTCTTGGACAGCATTAATTTCTGGATATGCACAGTTTGGCAAAGCAAAGGAAGCAATCCATCTATTTGAGGAAATGCTTTCTCATGGGCTTAAGCCTGATGAAGCTACTTTTGTAGGAGTTCTGTCAGCATGCAGTAGAGCAGGCTTAGTAGAGAAAGGACAGTCTTTTTTTGAGACAATGGTGAAAGAACACAGTATAGTGGCAACTTCGGATCACTACACTTGCATGATCGACCTCTTCAGTCGTGCAGGGAAACTGGAAGAAGCCAAGAGTTTTATTTCCAAGATGCCTTTTGTTCCTGATGCAATCGGTTGGGGTACGTTGTTGAGTTCATGTAGATTTTATGGTAACATGGAAATTGCAATATGGGCTGCAGATTCTTTATTCGAACTGGAGCCCCAACACCCTGCAGGCTATGTCTTGCTTTCCAGTATCTATGCTGCTGAAGGAAAATGGGAACGTGTGGCTCAGCTGAGGAAGGGAATGAGGGATAAAGGGATAAGGAAAGATCCTGGATATAGTTGGATTAAGTTTAAGAATAAAGTGTACATTTTCTCTGCTGATGATCAGTCCAGCCCATATTTAGACAAGATATATGTTCAGCTGGAACAGTTAAACCTGAAAATGATCGAGGAAGGTTACATGCCTGATCTGAGCTCTGTGCTTCATGATGTTGAAGAATCTGAGAAAATACGAATGCTGAAACATCACAGCGAGAGACTTGCCATTGTTTTCGGTTTGATGTTTATTCCACCTGGCTTCCCCATACGAGTGGTTAAGAATCTAAGGGTCTGTGGAGATTGTCACACTGCAACAAAATTTATTTCTAAAATTACCCAGAGAGAGATTCTATTAAGAGATTCGGTCCGCTTTCACTTATTAAAAAATGGAACATGTTCAAGTGGAGATTTCTGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_212752.p1 GENE.R_Transcript_212752~~R_Transcript_212752.p1 ORF type:complete len:667 (+),score=116.90,PPR|PF01535.16|6.9,PPR|PF01535.16|2.1e-05,PPR|PF01535.16|7.8e+02,PPR|PF01535.16|4.5,PPR|PF01535.16|1.4e-05,PPR|PF01535.16|0.091,PPR|PF01535.16|11,PPR|PF01535.16|0.091,PPR|PF01535.16|5.9e-07,PPR|PF01535.16|2.5e+03,PPR|PF01535.16|2.2e-05,PPR|PF01535.16|1.9e-08,PPR|PF01535.16|0.036,PPR|PF01535.16|0.0001,PPR|PF01535.16|2.8e+03,PPR|PF01535.16|6.7,PPR_2|PF13041.2|1e+03,PPR_2|PF13041.2|7.3e-07,PPR_2|PF13041.2|5.9e+02,PPR_2|PF13041.2|0.0042,PPR_2|PF13041.2|0.0004,PPR_2|PF13041.2|1.3,PPR_2|PF13041.2|2.7e-12,PPR_2|PF13041.2|0.012,PPR_2|PF13041.2|1.4e-11,PPR_2|PF13041.2|69,PPR_2|PF13041.2|0.096,PPR_2|PF13041.2|1.7e+02,PPR_1|PF12854.3|0.052,PPR_1|PF12854.3|2.5e+03,PPR_1|PF12854.3|0.00064,PPR_1|PF12854.3|2.4,PPR_1|PF12854.3|4.4e+02,PPR_1|PF12854.3|1.3,PPR_1|PF12854.3|0.019,PPR_1|PF12854.3|8.3e+02,PPR_1|PF12854.3|0.17,PPR_1|PF12854.3|1.4e-05,PPR_1|PF12854.3|0.64,PPR_1|PF12854.3|0.058,PPR_1|PF12854.3|2.5e+03,PPR_3|PF13812.2|1.6e+03,PPR_3|PF13812.2|0.014,PPR_3|PF13812.2|2.1e+03,PPR_3|PF13812.2|0.4,PPR_3|PF13812.2|32,PPR_3|PF13812.2|9.8,PPR_3|PF13812.2|2.9e+03,PPR_3|PF13812.2|0.079,PPR_3|PF13812.2|0.22,PPR_3|PF13812.2|0.00016,PPR_3|PF13812.2|22,PPR_3|PF13812.2|0.66,PPR_3|PF13812.2|1.1e+03,DYW_deaminase|PF14432.2|2.2e-35,TPR_14|PF13428.2|1.2e+04,TPR_14|PF13428.2|44,TPR_14|PF13428.2|9.7e+03,TPR_14|PF13428.2|2.2e+03,TPR_14|PF13428.2|7.9e+02,TPR_14|PF13428.2|4.8e+03,TPR_14|PF13428.2|0.79,TPR_14|PF13428.2|6.6e+03,TPR_14|PF13428.2|1.3e+03 R_Transcript_212752:304-2304(+)
MLSAYSNSGHLRGMLEIFQSIPVKDGISWNAFISGYANHGRFHDALRAYRIMLEEGTMNLNRITFSTMLILSSEMGSVDLGRQLHGQVLKFGFISYMFVANPLVDMYSKLRFVYDAKRVFEEAPERNLVMHNTMISGFSRCGMFEESCRLLRSMPDRDSITWTSVITGLTQNGLDREAVVLREMRQEGFDMDQFTFGSVLAACGRMGALKEGLQLHAHIIQTGYQDNIFVGSALIDMYCKCNSIRCAEIIFNGMRHKNTVSWTAMLVGYSQNGHSEEAIRIFCKMQKNAIEPDDITLGSVISSCADLASLEEGIQFHTRALVSGIICSVAVSNALITLYGRCGMIEDSLRLFKEMKVKDEISWTALISGYAQFGKAKEAIHLFEEMLSHGLKPDEATFVGVLSACSRAGLVEKGQSFFETMVKEHSIVATSDHYTCMIDLFSRAGKLEEAKSFISKMPFVPDAIGWGTLLSSCRFYGNMEIAIWAADSLFELEPQHPAGYVLLSSIYAAEGKWERVAQLRKGMRDKGIRKDPGYSWIKFKNKVYIFSADDQSSPYLDKIYVQLEQLNLKMIEEGYMPDLSSVLHDVEESEKIRMLKHHSERLAIVFGLMFIPPGFPIRVVKNLRVCGDCHTATKFISKITQREILLRDSVRFHLLKNGTCSSGDFW*

Click here to download the sequence:
Link to NCBI Protein BLAST