Transcript Information: R_Transcript_212908.p1


Annotated TAIR IDAT5G45320.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 253 Blast hits to 253 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 253; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:18362354-18363053 | Reverse length=198
E-Value5E-36
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.0089576407131
Replicate 20.94958142586273
Replicate 31.3813108098182
Condition 2: 8 Hour
Replicate 11.2304454747359
Replicate 21.0112961636717
Replicate 31.9154965981313
Condition 3: 24 Hour
Replicate 12.0765855783853
Replicate 21.1083044668632
Replicate 31.9797923837395


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_212908.p1 GENE.R_Transcript_212908~~R_Transcript_212908.p1 ORF type:complete len:199 (+),score=23.57 R_Transcript_212908:154-750(+)
ATGAGGCCACACACCCGCTCCCAACGTACCCATCCCTTGATTTGGTGCCTAGCCATTATTTGCACCATCTTGACAGTCATTGTTATCATAATTGGCATTGTTGTTTTCATAGGCTACCTAGCCATCAAACCAAGCATACCATATGTTAGTGTGACACAAGCTCATTTAGACAAGTTCGATGCTGATCAAGCTGGGCTGCTAACCACTAGGCTAACTATCGTTTTCAAGGCCGAAAATGACAACCCCAAGGCCCATGCTAGCTTCACTGGCTTCTTTTATCACTTGGCATTTGATGGGGTTGAAATTGCAAGATTGAGGAATTGGGACTTTGATTTGCAAAAGAATGAATCCAAGTTGTTTACATTTTTGGTTAACTCGGATCCTATACCGTTGGATCCAGATCAAATGAATGTGGTAGATCGTTCTTTAAAGCAAAATAGGATTGTGTTTGATTTGTATGGCTCTACAAGGACAAGGTGGCAAGTTGGGCCCTTGGGCTCCCTCAGGCACTGGCTACGCTTGGGTTGTCAGCTCCGTTTTCAGGCTGTTGGTGGCTACATTACTCCTGATTCTCATTGTAACTCCAAGTCCAAATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_212908.p1 GENE.R_Transcript_212908~~R_Transcript_212908.p1 ORF type:complete len:199 (+),score=23.57 R_Transcript_212908:154-750(+)
MRPHTRSQRTHPLIWCLAIICTILTVIVIIIGIVVFIGYLAIKPSIPYVSVTQAHLDKFDADQAGLLTTRLTIVFKAENDNPKAHASFTGFFYHLAFDGVEIARLRNWDFDLQKNESKLFTFLVNSDPIPLDPDQMNVVDRSLKQNRIVFDLYGSTRTRWQVGPLGSLRHWLRLGCQLRFQAVGGYITPDSHCNSKSK*

Click here to download the sequence:
Link to NCBI Protein BLAST