Transcript Information: R_Transcript_2131.p1


Annotated TAIR IDAT3G15390.1
Annotated Gene Namesilencing defective 5
Annotated Gene Symbol(s)SDE5
Annotation TypeOrtholog
Chromosome Positionchr3:5196689-5199531 | Reverse length=490
E-Value1.2E-70
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 110.546155218282
Replicate 29.4483351873341
Replicate 311.623048335825
Condition 2: 8 Hour
Replicate 110.519853088446
Replicate 211.967212689079
Replicate 317.882697870455
Condition 3: 24 Hour
Replicate 114.539944577546
Replicate 212.86556768617
Replicate 312.362499869451


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_2131.p1 GENE.R_Transcript_2131~~R_Transcript_2131.p1 ORF type:5prime_partial len:540 (+),score=141.13,DUF1771|PF08590.6|2.1e-13 R_Transcript_2131:3-1622(+)
CTCACCTTCACTCCTCCACCCGCTGCTACTTTGATCCTCACTCCTCCGCCTTTTGGCAACATTTCTCTCTCCTCTATTCTACTACTATATATATACACTCACCCTTTCCATTTTCTCTCTCATTTTCCTTCTCCAAGAAGCCTCCTTGTACTCTCGCCATTATTCTCTCAATCTCTTGTCATGGAAACAGTTAGTCCGTGCAGTTCGTCTCTTGGGGATGTCAATAGGGATATTGAGCTGCTGCTTGAAGCTTTTGGATCAGCTTTTTCACTTGAGGCCATAACCTCTGCTTACTCCCAGGCGAGGCGCAACGTGGAGTTGGCCGGTGTGATTCTTTATGAATTGCAAGGAGATACTTCTGCAGCAATGACAAGTGGATCCAAACATGGACAAGTTGAAGGCACCTCACTATCATCAGTGTCATCTTCAGAAGATGCTTCACAGCATCAGTTATCTGCAGATGGACATGATACATGCCTTGGGCCAAGCAGCATTGTTTCCAGGGCCCCTCGTGTGGAAAAGTCAAGCTCGAGACTGTCAGCAAATGGATCTCTGAAAAGTCAGCCATCTGAGGAATCACTTGCTATCTCACGCGGCAGTAGTGGGAAGGACAGCAATAACATGCCTGAAGACATTGGAGATTTTTTGTTCAAAATGCTTGGAGAAGGTTTTCAACTTGACAAGAAAGTGATCCATGAAGTTCTTGGCCTCTGTGGATATGATCTGGAAAAGAGTATGGAAACACTTGTTGACCTATCAGCTTCAAGCCTTGAAAAGAGTGATGATGTTGTGAGCACAAGCCTGACTACTGACAGTGAGCTGTATCTAAAGATTGGCCTGCCTCCGTGTCCCGAGAGATCACAGTTTCCCGATTCTTCTCCGAGGTCTGGGAACCAAAATGGGAAACAATCACGTAGGAGAAACAAAGATCAGGGTGATCTGCAGAGGGAAATTTTGGGGTCTTTGTTCACTGCTCCTGAAAGAGTAGAGGAGTGGTCCAAACAAGCAAATACTCAAAATAGAGTCTGGAGATCAAGTGCATTTGGAAGACCTGTTGTTGAACCTCTGAAAGAGACTGAAATAGAGCAGACATTTGTTGCAGTGAAACCGCTAGTAGATGTCAAAGAAGATGAAGAGGGTGAAAACAGCTTCAAAGTCCTTCGCCAAGCTGTCAAGGAGTACTGGGCTATTATGAAGGAATACTACAAAGCTGCTGTTGAGGCATATTCTAAGGGAGATCAAGAGCGAGCTTTCAAACTTATGAAAGAGGGTCAATTTTATAACATGAAGGCTCGAGAAGCTGATGAAAAGTCCGCACAAAAGCTTTTGGAAACAAGTGATGAGGAAATGTTGCTTGATTTGAGTACCCATCAACCAAAGGAAGCAGTTAAAATCCTGAAGCTTCATCTATCTAATCTTGCTGGCATCCCAAGTATACCTTTTCTCAAGGTCACCGTGGGAAATGATGACAATGAGAGCAAACGTGGGGGTCCAAAACGACTGGTTCTAAAGCTTTTGGAGAGAGAATCGATCAAATGGACTGAAGTAGACGATGGAAAGATAATAGCGATTCAGCTGGCTGAAATCAATCCAAAGACTTTGAGTTTTGTCAAAAAGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_2131.p1 GENE.R_Transcript_2131~~R_Transcript_2131.p1 ORF type:5prime_partial len:540 (+),score=141.13,DUF1771|PF08590.6|2.1e-13 R_Transcript_2131:3-1622(+)
LTFTPPPAATLILTPPPFGNISLSSILLLYIYTHPFHFLSHFPSPRSLLVLSPLFSQSLVMETVSPCSSSLGDVNRDIELLLEAFGSAFSLEAITSAYSQARRNVELAGVILYELQGDTSAAMTSGSKHGQVEGTSLSSVSSSEDASQHQLSADGHDTCLGPSSIVSRAPRVEKSSSRLSANGSLKSQPSEESLAISRGSSGKDSNNMPEDIGDFLFKMLGEGFQLDKKVIHEVLGLCGYDLEKSMETLVDLSASSLEKSDDVVSTSLTTDSELYLKIGLPPCPERSQFPDSSPRSGNQNGKQSRRRNKDQGDLQREILGSLFTAPERVEEWSKQANTQNRVWRSSAFGRPVVEPLKETEIEQTFVAVKPLVDVKEDEEGENSFKVLRQAVKEYWAIMKEYYKAAVEAYSKGDQERAFKLMKEGQFYNMKAREADEKSAQKLLETSDEEMLLDLSTHQPKEAVKILKLHLSNLAGIPSIPFLKVTVGNDDNESKRGGPKRLVLKLLERESIKWTEVDDGKIIAIQLAEINPKTLSFVKK*

Click here to download the sequence:
Link to NCBI Protein BLAST