Transcript Information: R_Transcript_215581.p1


Annotated TAIR IDAT4G29090.1
Annotated Gene NameRibonuclease H-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:14333528-14335255 | Forward length=575
E-Value6E-44
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.44807010095563
Replicate 20.35265104058382
Replicate 30.38473848675708
Condition 2: 8 Hour
Replicate 10.37962581313558
Replicate 20.43335042327879
Replicate 30.18761354646395
Condition 3: 24 Hour
Replicate 10.50424124401934
Replicate 20.22796133220235
Replicate 30.084836064677897


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_215581.p1 GENE.R_Transcript_215581~~R_Transcript_215581.p1 ORF type:complete len:774 (+),score=82.31,RVT_3|PF13456.2|8.4e-20,zf-RVT|PF13966.2|8e+03,zf-RVT|PF13966.2|9e-20,zf-RVT|PF13966.2|1.6e+04,RVT_1|PF00078.23|5.5e-14,RNase_H|PF00075.20|1e-05 R_Transcript_215581:809-3130(+)
ATGGGACTTCCTATATTACTCCCTGAAGTCATCATGGAGTGTATTACCTCGGTCTCAATGAAGATATTATGGAATGGGGAACCGACTGAGGGTTTCAAACCCTCAAGGGGGATTAGACAAGGTGACCCCCTTTCGCCTTATCTCTTTGTTATGTGTATTGAACGCCTTAATCAACTTATTGAGCAAGCTGTGAGAGATGGGAAGTGGAAGCCGATATCATGTAATAGAGGTGGTCCCCTACTTTCTAATCTCTTCTTCGCAGATGATATGATTCTATTTGCCGAAGCGGATGTCATCCAAGCACAAAATATAAAGGAAATTCTGGATATCTTTTGTGAAGCTTCTGGGCAGAAAGTTTCCTACGAGAAATCACGAGTTTTCTTCTCAAGCAATGTTGACCGAGCTTTAGTGGATGAGATAAGCTCGAGCCTCGGTATACCTATCACTGATGATCTGGGCATATATCTTGGTATGCCGTTAATCAATGGTAGAGTAACTAGAGCGACATATCAACATATAGTGGACAAGGTAGACAAGCGTTTAAGTGGGTGGAAGTCTCGATGCTTATCCATGGCGGGACGCACCACCTTAATTAAATCTTCACTTTCCTCTATTCCTTATTATTCCATGCAGTCTGCCAAATTACCTAGGTCGCTGTGTGATGACATTGATCGGAAATCACGCCGATTCCTGTGGGGCGGTGACGAGGATCACCGCAAAATCCACCTGGTGAGCTGGCAACAGTTGCAAAAGGACAAAAAGGAGGGAGGTCTGGGCATCAGATCTATGAGACAAGACAATGCGGCTTTTTTGATCAAACTGGGATGGAGAGTCCTTTCAGAGCGCAACTCACTTTGGTCTCAAGTCCTCAGGTCAAAATATTGCAACAACAGATGTGATCTTGATATGTTCGAAAACAAGAGGGACTGTTCAAGTACATGGAGAGGCATTCTGGACAACGCTCAGCTTGTTAGGCAAGGGGCCAAGAGTGAAATAGGCAACGGGAGGCGGACTTTCTTCTGGGATCACGCATGGGCCACTGAAGTGCCACTTGCGCGATACACTACCCAGGATATCCCTCTGGAAATCCAGGATATTACGGTCGCCGAGGCGTGGGATGAAGCTCAGGGTTGGAAGTGGGATCTTTTCTCGGACTTGCTACCAGACTTCGTTCTTCGGCAGATTGAAGCTTTCCGGGTAGAAAATGATGATGAGCTGGTCGACACGCTAACGTGGCAAGGCACCCCCTCGGGGGAGTTCACAATCAAATCAGCCTTAAGACTAGTTCGAGATGAACCTGAGAAGCCAGATAAGATGTGGGATGCGGCGTGGAAAGTGGCAGCTCCCCAACGTGTACGCATGTTCCTTTGGCTTGTGTTAAATGATCGTCTCCTTACCAATGCTAATAGGGTGGTGCGTCATTTAGCTGAAGATCCAAAATGCATAATTTGCGGAGCTCCAGAGGAGACCACTGACCATATTTTGCGTCGTTGCACGCTAGCTTTGAACTTATGGGGTAGTTTGAATGCGGATGAAGAGTTCTTGCATACCCCTCTCAAACTTTGGGTTGTCTCTAATCTTGATCCCACTAATCCTAATAGGAACATAAGATGGCCCACTGCCTTTGCTATGGCCCTTTGGTGGATATGGAAATGGCGAAATTATCATGTATTTGGCAGATCTCATGAGATTCCTACTTCACCGCTGCACTTCCTCCAAGCCAGAATAAGAGAGGTGGAGGATGCTTTCTTACGTCAGGAGATTTTGCATGGGTCGAACACACATAAGAAGGAGGAATGCATGATACGGTGGAACCCTCCAGCTGAGGGTTGGGTGGTCCTCAACACAGATGGGGCGGCCAAGGGGAATCCTGGCCCTGCAGGAGGAGGAGGACTCCTTAGAAAGCAAGATGGACGCCTGATCATAGGCTTTGCCACTCGATGGGGTATTTGTACCTCAGTCAGGGCTGAACTGCTAGCCCTCAAACGAGGCCTACAACTAGCAAAAGAGCGAGGCATTCAACGGCTGATCATTAGAGTGGATTCCGAAGTAGTCATTCGCATGTTGGATAAAGAACTGCAGGAGAGTCATGCTTTCTACAACATTCTCTTCCAGTGCAAGCAGCTTTTGAATGATAGCAACTGGGTCACCAGAATCCAACACTGTTACAGAGAAGCCAACAGAGCTGCAGATTGGCTAGCTAACCTGGGAGTGACTCAAGAAATGCCTGAGCAGATACTCTACACCCCGCCTGATCAATTAAGAAGCATACTGCATGAAGATTTCATAGGTGTTGCCTTTCCTCGTAGGATAATACTGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_215581.p1 GENE.R_Transcript_215581~~R_Transcript_215581.p1 ORF type:complete len:774 (+),score=82.31,RVT_3|PF13456.2|8.4e-20,zf-RVT|PF13966.2|8e+03,zf-RVT|PF13966.2|9e-20,zf-RVT|PF13966.2|1.6e+04,RVT_1|PF00078.23|5.5e-14,RNase_H|PF00075.20|1e-05 R_Transcript_215581:809-3130(+)
MGLPILLPEVIMECITSVSMKILWNGEPTEGFKPSRGIRQGDPLSPYLFVMCIERLNQLIEQAVRDGKWKPISCNRGGPLLSNLFFADDMILFAEADVIQAQNIKEILDIFCEASGQKVSYEKSRVFFSSNVDRALVDEISSSLGIPITDDLGIYLGMPLINGRVTRATYQHIVDKVDKRLSGWKSRCLSMAGRTTLIKSSLSSIPYYSMQSAKLPRSLCDDIDRKSRRFLWGGDEDHRKIHLVSWQQLQKDKKEGGLGIRSMRQDNAAFLIKLGWRVLSERNSLWSQVLRSKYCNNRCDLDMFENKRDCSSTWRGILDNAQLVRQGAKSEIGNGRRTFFWDHAWATEVPLARYTTQDIPLEIQDITVAEAWDEAQGWKWDLFSDLLPDFVLRQIEAFRVENDDELVDTLTWQGTPSGEFTIKSALRLVRDEPEKPDKMWDAAWKVAAPQRVRMFLWLVLNDRLLTNANRVVRHLAEDPKCIICGAPEETTDHILRRCTLALNLWGSLNADEEFLHTPLKLWVVSNLDPTNPNRNIRWPTAFAMALWWIWKWRNYHVFGRSHEIPTSPLHFLQARIREVEDAFLRQEILHGSNTHKKEECMIRWNPPAEGWVVLNTDGAAKGNPGPAGGGGLLRKQDGRLIIGFATRWGICTSVRAELLALKRGLQLAKERGIQRLIIRVDSEVVIRMLDKELQESHAFYNILFQCKQLLNDSNWVTRIQHCYREANRAADWLANLGVTQEMPEQILYTPPDQLRSILHEDFIGVAFPRRIIL*

Click here to download the sequence:
Link to NCBI Protein BLAST