Transcript Information: R_Transcript_218501.p1


Annotated TAIR IDAT1G15820.1
Annotated Gene Namelight harvesting complex photosystem II subunit 6
Annotated Gene Symbol(s)LHCB6, CP24
Annotation TypeOrtholog
Chromosome Positionchr1:5446685-5447676 | Reverse length=258
E-Value8.8E-145
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 125.96741992426
Replicate 23.7238721493057
Replicate 37.7796467307688
Condition 2: 8 Hour
Replicate 17.391959229357
Replicate 25.9066480335207
Replicate 33.6303221240774
Condition 3: 24 Hour
Replicate 13.1187964535749
Replicate 22.912958721397
Replicate 31.9822826886247


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_218501.p1 GENE.R_Transcript_218501~~R_Transcript_218501.p1 ORF type:complete len:265 (+),score=71.08,Chloroa_b-bind|PF00504.17|9.4e-46 R_Transcript_218501:170-964(+)
ATGGCAGCTACAACATCTGCAAGTGCAATAGTAAATGGGTTGTCTTCACCCTTCTTGTCTGGTGGGAAGAAATGTGTCAAGTCTAATTTGTTTGGTGTGATTAATAATAATAAAGAGGGATCATCAAGTGTTGTTAATTCTACAAAGAAGTTGGTAGTTGTAGCTGCAGCTGTTGAGAAGAAGTCTTGGATTCCTGCTGTTAAAGGTGGTGGCAATCTCATTGATCCTGAGTGGCTGGATGGCTCGTTGGCAGGAGACTATGGATTTGACCCACTAGGGCTGGGCAAGGACCCAGCATTCCTCAAGTGGTACAGAGAGGCTGAGCTGATCCACGGGCGTTGGGCCATGCTGGCTGTGGTGGGGATCTTTGTGGGCCAGGCCTGGAGTGGCATCCCATGGTATGAGGCTGGTGCAGCCCCAGGAGCAGTGGCCCCATTCTCATTTGGGTCACTATTGGGCACCCAACTGTTGTTAATGGGCTGGGTTGAGAGCAAGAGATGGGTAGACTTCTTTAACCCGGACTCACAATCAGTAGAATGGGCCACACCCTGGTCCAAAACTGCTGAGAACTTTGGGAATGCAACAGGTGATCAAGGTTACCCAGGTGGCAAGTTCTTTGACCCATTGCGCTTGGCTGGGTCTATGCAAGATGGAGTTTATGTTGCTGATAGGGAGAAGTTAGAGAGATTAAAGCTGGCTGAAATTAAGCATGCTAGAATTGCTATGTTAGCTATGCTTACCTTTTACTTTGAGGCAGGCCAAGGGAAAACTCCCCTTGCTGCTTTAGGCCTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_218501.p1 GENE.R_Transcript_218501~~R_Transcript_218501.p1 ORF type:complete len:265 (+),score=71.08,Chloroa_b-bind|PF00504.17|9.4e-46 R_Transcript_218501:170-964(+)
MAATTSASAIVNGLSSPFLSGGKKCVKSNLFGVINNNKEGSSSVVNSTKKLVVVAAAVEKKSWIPAVKGGGNLIDPEWLDGSLAGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVVGIFVGQAWSGIPWYEAGAAPGAVAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFGNATGDQGYPGGKFFDPLRLAGSMQDGVYVADREKLERLKLAEIKHARIAMLAMLTFYFEAGQGKTPLAALGL*

Click here to download the sequence:
Link to NCBI Protein BLAST