Transcript Information: R_Transcript_21859.p1


Annotated TAIR IDAT3G27340.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: oxidation reduction; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Gamma-butyrobetaine dioxygenase/Trimethyllysine dioxygenase, N-terminal (InterPro:IPR010376); Has 1035 Blast hits to 1035 proteins in 399 species: Archae - 0; Bacteria - 765; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 231 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:10121303-10122692 | Forward length=141
E-Value1E-31
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.5351334659332
Replicate 22.3329222684776
Replicate 31.4846959553062
Condition 2: 8 Hour
Replicate 13.4008145760063
Replicate 22.6915876290316
Replicate 32.6891274993166
Condition 3: 24 Hour
Replicate 12.9760120480357
Replicate 22.8590150413711
Replicate 34.0532786457217


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_21859.p1 GENE.R_Transcript_21859~~R_Transcript_21859.p1 ORF type:5prime_partial len:108 (+),score=11.01,DUF971|PF06155.8|2.4e-10 R_Transcript_21859:2-325(+)
AATACAAACTTTACAATGGCGATGTTGGCGATACGGAAGGTTTTTCGAAGCATTCATGTCGCTACTGATGCTCCTCGCCTTACCAGATTTGCTCTCCATCCACCTAAATGTGTGGAGGTTGAATTTGCTGATGGCAGTACATTCAGTCTACCAGCTGAATTTCTCAGAATATACAGCCCTGCCGCTGACAGCAAGATACGTTCCATTGGGGGTGAAAAGGTAATATTTGGGCGTCGTCATGTTGGAATAATGTCTGCAGAACCTGTGGGGAACTATGGGGTAAGGTACTTATCAGGTCATGCCCTAGTAACCCAACTAATTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_21859.p1 GENE.R_Transcript_21859~~R_Transcript_21859.p1 ORF type:5prime_partial len:108 (+),score=11.01,DUF971|PF06155.8|2.4e-10 R_Transcript_21859:2-325(+)
NTNFTMAMLAIRKVFRSIHVATDAPRLTRFALHPPKCVEVEFADGSTFSLPAEFLRIYSPAADSKIRSIGGEKVIFGRRHVGIMSAEPVGNYGVRYLSGHALVTQLI*

Click here to download the sequence:
Link to NCBI Protein BLAST