Transcript Information: R_Transcript_219408.p1


Annotated TAIR IDAT5G17160.1
Annotated Gene Nameunknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03130.1); Has 14330 Blast hits to 10381 proteins in 896 species: Archae - 94; Bacteria - 2881; Metazoa - 4019; Fungi - 1576; Plants - 515; Viruses - 110; Other Eukaryotes - 5135 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:5639843-5642427 | Reverse length=569
E-Value0.0003
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.55649271203411
Replicate 20.38407866615179
Replicate 30.13967522924483
Condition 2: 8 Hour
Replicate 10.14930405455637
Replicate 20.54538736198014
Replicate 30.55340276281668
Condition 3: 24 Hour
Replicate 11.9598128121211
Replicate 20.67241642959077
Replicate 31.2011545255005


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_219408.p1 GENE.R_Transcript_219408~~R_Transcript_219408.p1 ORF type:3prime_partial len:164 (+),score=53.42 R_Transcript_219408:67-489(+)
ATGGCTGATGCCCTTGAGTCTCTTGAGAGAGTGGAAGGACTTGAAGAGCTTCTGAACAAGTCTGACTGTCTTACTGCAAAGTCACCTGAAATGTCAAGGATGACTTCAACTCGGGTTCGCCAAACACGTACTTGTCAGAAAAGCACTCGGCGAAAGCCTGCATATGCTGGTTCTGCACTTGGTAAGATTGAAACTGTACAGAAAAAGGAAGACAGTGTATTGCAAAGTTTGGCAAAGAAAATTGAGTCAAATATGGAAGACACAGAGTGTCCTACTTCTGTTACCACTGGTAAACATGGTCAAGGGGAGAATGATCTGCAGAGTCAGCTTGAGCTGTGCCTGGAGAATTCTGAAGTTTCGGATCTTGTCTCTGAGAATAGTAGCAGCAATAATGCTGAATCAAAATCTATATCACTACCAGAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_219408.p1 GENE.R_Transcript_219408~~R_Transcript_219408.p1 ORF type:3prime_partial len:164 (+),score=53.42 R_Transcript_219408:67-489(+)
MADALESLERVEGLEELLNKSDCLTAKSPEMSRMTSTRVRQTRTCQKSTRRKPAYAGSALGKIETVQKKEDSVLQSLAKKIESNMEDTECPTSVTTGKHGQGENDLQSQLELCLENSEVSDLVSENSSSNNAESKSISLPE

Click here to download the sequence:
Link to NCBI Protein BLAST