Transcript Information: R_Transcript_21994.p1


Annotated TAIR IDAT1G44910.1
Annotated Gene Namepre-mRNA-processing protein 40A
Annotated Gene Symbol(s)ATPRP40A, PRP40A
Annotation TypeOrtholog
Chromosome Positionchr1:16975930-16982818 | Forward length=958
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 136.505921909437
Replicate 235.685802496627
Replicate 336.840591162174
Condition 2: 8 Hour
Replicate 142.147044372471
Replicate 244.279599352178
Replicate 339.807063215519
Condition 3: 24 Hour
Replicate 143.624157236824
Replicate 236.634158835196
Replicate 338.210738690685


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_21994.p1 GENE.R_Transcript_21994~~R_Transcript_21994.p1 ORF type:complete len:1062 (+),score=327.28,FF|PF01846.15|2.2e-13,FF|PF01846.15|2.2e-14,FF|PF01846.15|8.6e-08,FF|PF01846.15|0.00037,FF|PF01846.15|1.7e+03,FF|PF01846.15|2.4e-05,WW|PF00397.22|4.6e-11,WW|PF00397.22|3e-07,WW|PF00397.22|8.9e+03 R_Transcript_21994:173-3358(+)
ATGGCAAATAATCCTCCTCCATCTGCTCCACAGCTTCGACCACCTGCAATGGGTGCTCCTCAAAATTTCGGGCAGTTTCGGCCAATGGTCCAAGGACAGCAAGGGCAGCCATTTTTACCTGGATCTTCGCAACAGTTTCCGCCAGTTGGACAGAACATGCCTACAGGTCCTAACCAACCTATGCATCCTAACCAACCTATGCATCCTAATCAACCTATGCAGTACTCACAACCTATGCAGCAGTTACCTCCCAGGCCGGGAATGCCTGCTGTTGGTTTATCATCACAAGCTATGCCGCCAATGTCCTATGCTCAGCCAAACAGGCCTATTACGTCTGGTGCACAGCAGAATCATCCTGCCCCACCTTTTGGCAATCACATGTCCAGTGGAGGTGGCATGGGAATTCCTTTTTCTTCACCATATATGTTTCAACCAGCATCCCATATGCCTACTCCTGCTGCACCTGTTCCTGGACAACCTTGGTTATCATCTGGAAGTCAAGGCTCCACACCTTTTGCGCCAGTTCAGCAAACCGCAGACCAGTCTTCAGTTTCTTCTGCCGCTGTTCCTGCTGCCAATCCTCCTGAAACAAGTCAACAGTCTGCTTCAGATTGGCAAGAGCATGCTACTCCTGATGGAAGAAGATATTATTATAACAAGAAGACTAAGCAGTCCAGCTGGGAGAAGCCCTTGGAGTTGATGACTCCTGTTGAGAGAGCTGATGCATCAACTGTGTGGAAAGAATTTACTACCCCAGAAGGGAAAAAGTATTATTACAACAAGGTTACAAAGGAATCAAAATGGACAATACCTGAAGAGTTGAAGCTGGCTCGTGAACAAGCAGAAAAAGCTGCCAGTCAGGGATTACAGTCAGATGCTGGGATGCCATCCCTCTCCATCACTGCTGGAAGTGTGACTTCTGAGGAAGGACCTCCAACCGCGGCAGTTTTGGCTAGCTCCAATGGTTCAGCATCAGTGCCTGGCATAAGTTCAGCCCCATTAAGTTCTTCGGCTGTCAATTCACAACCTATGGTTAATGCCTCATTGTCAGCCCCTTCTATGGGGCATTCGGCTGGTCCAACCAATGTGACGGTAGCAACTTCGCCTGCAGTCACCGGTCCTGCTACCTCAGCATCTATTTCCGGTGATGCTAATGCTCCTGCTGCAGTTAACACCAGCTCAGCATTAATGAGTGCCTCAGATAGATTGCCTTCTCAAGATATCTCAACTTCTGTGGATGGAACTTCTGTGCAGGACCTTGAGGAGGCACGGAAAGGGATGGCAGCTGCAGGGAAAGTAAATGTCAGTGAGTTGGAGGAGAAAACAACAGATGATGAACCTCTGGTTTTTGCCAATAAGCAGGAAGCTAAAAATGCATTCAAATCACTTTTGGAGTTCGCGAATGTTCAGTCTGACTGGACTTGGGATCAGGCAATGAGGGTAATAGTCAATGATAAAAGATACGGTGCTCTAAAGACATTGGGAGAGCGCAAACAAGCATTTAATGAGTACTTGGGGCAACGAAGAAAGCAAGAAGCTGAGGGGCGACGCATGAGGCAGAAAAAAGCAAAGGAAGAATTCACGAAAATGTTAGAAGAGTCAAAGGAACTCACGTCATCTGTGAAATGGAGTAAAGCTATTACTATGTTTGAAGATGATGAAAGATTTAAGGCTGTTGAAAAGCCCAAAGATCGGCAAGAGCTGTTTGAGAATTACTTGGTGGAACTCCAGAAAAAGGAGAAGGAAAAGGCTGAAGAAGAGTATAGGCAGAACAGAGAAGAATACTGGAAGTTCCTGGAATCATGCGACTTCATTGAGGTGAACAGTCTATGGAGAAAAGTTCAGGACCGCTTGGAAGATGATGAAAGATGTTCGCGACTAGAAAAGATTGACCGCTTGGAAATTTTCCAGGATTACATTCGTTACTTGGAGAAGGAGGAAGAGGAGCAGAAGAAGATGCAAAAGGAACAATTACGGAGGGCAGAGCGAAAGAATCGTGATGAATTTCGCAGTATGATGGATAGTGATGTTGCAGCCGGCGTTCTCACCGCTAAAACATGCTGGCGTGAATATTGCGAAAAGGTCAAAGAATCTTCTGCGTATCTTGCTGTGGCACGTAATACATCTGGGTCGACACCCAAAGATTTGTTTGAGGATGTAGTTGACGAACTGGAGAATCAGTATCATGATGACAAAAGTCGAATAAAAGATGCAGTGAAGTTGTCTAAGATTTCTATGACATCAACGTGGACATTTGAAGAATTTAAGGAATCTATTTTATCCGAGCTTGGGTCTCCACCAATATCAGATATTAATATGAAGCTGGTGTTTGAAGAGCAGCTTGAGAGGGTAAAGGAGAAGGAAGAGAAAGAAGCTAAAAAGCGCCAGCGTCTTTTGGATGACTTCACAGACTTACTGCGCTCCCTCAAGGAAATAAATGCATCTTCTACCTGGGAAGACTGCAGAGGACTGTTTGATGATAGTGATGAGTACAGAGAAATGGGGGAAGATTTAGCAAAGGATACCTTTGAGGATTATGTTGTTCACCTGCAAGAGAAGGCAAAAGAGAAGGAACGCAAGCGTGAGGAGGAAAAGGCGAGGAAGGAGAAAGAAAGAGAGGAGAGAGAGAAGAGGAAGGAGAAGGAGAAGGAGAGAAAGGAAAAAGACAGAGACCGTGATAGAGAAAAACGAAAAGAAAGGTCCAAGAAGGAGGAATCTGATGATGAAACTATGGATGCAACTGATAGCCATGGTTACAAGGATGATAATAGAAAGGACAAGGAAAAAGACAAGGATCGGAAGCACAGGAAGAGGCACCATGATGCTGGTGATGATGTGAGTTCTGACAGGGATGATGACAAAGATAGGCGTCACCGGAAGCGACACCATGACACGGCTGATGATGTCAGTTCCGACAGGGATGATGACAGGGAAAGGCGTCACAGGAAACGGCACCATGATAACGCTGATGATGTCAGTTCTGATAGGGATGACAAGGAAGAGCACAAGAAATCTCGACGGCATGGTAGTGACAGAAAGAAATCTAGGAAGCATGAATATTCACCTGATTCGGATGGTGAAAGTAGGCATAAAAGACACAAGAGGGATCACCGCGATGGTCGAAGAAATAGCACCCATGATGAACTTGAAGACGGTGAGCTAGGTGAGGATGGTGAAATCCAGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_21994.p1 GENE.R_Transcript_21994~~R_Transcript_21994.p1 ORF type:complete len:1062 (+),score=327.28,FF|PF01846.15|2.2e-13,FF|PF01846.15|2.2e-14,FF|PF01846.15|8.6e-08,FF|PF01846.15|0.00037,FF|PF01846.15|1.7e+03,FF|PF01846.15|2.4e-05,WW|PF00397.22|4.6e-11,WW|PF00397.22|3e-07,WW|PF00397.22|8.9e+03 R_Transcript_21994:173-3358(+)
MANNPPPSAPQLRPPAMGAPQNFGQFRPMVQGQQGQPFLPGSSQQFPPVGQNMPTGPNQPMHPNQPMHPNQPMQYSQPMQQLPPRPGMPAVGLSSQAMPPMSYAQPNRPITSGAQQNHPAPPFGNHMSSGGGMGIPFSSPYMFQPASHMPTPAAPVPGQPWLSSGSQGSTPFAPVQQTADQSSVSSAAVPAANPPETSQQSASDWQEHATPDGRRYYYNKKTKQSSWEKPLELMTPVERADASTVWKEFTTPEGKKYYYNKVTKESKWTIPEELKLAREQAEKAASQGLQSDAGMPSLSITAGSVTSEEGPPTAAVLASSNGSASVPGISSAPLSSSAVNSQPMVNASLSAPSMGHSAGPTNVTVATSPAVTGPATSASISGDANAPAAVNTSSALMSASDRLPSQDISTSVDGTSVQDLEEARKGMAAAGKVNVSELEEKTTDDEPLVFANKQEAKNAFKSLLEFANVQSDWTWDQAMRVIVNDKRYGALKTLGERKQAFNEYLGQRRKQEAEGRRMRQKKAKEEFTKMLEESKELTSSVKWSKAITMFEDDERFKAVEKPKDRQELFENYLVELQKKEKEKAEEEYRQNREEYWKFLESCDFIEVNSLWRKVQDRLEDDERCSRLEKIDRLEIFQDYIRYLEKEEEEQKKMQKEQLRRAERKNRDEFRSMMDSDVAAGVLTAKTCWREYCEKVKESSAYLAVARNTSGSTPKDLFEDVVDELENQYHDDKSRIKDAVKLSKISMTSTWTFEEFKESILSELGSPPISDINMKLVFEEQLERVKEKEEKEAKKRQRLLDDFTDLLRSLKEINASSTWEDCRGLFDDSDEYREMGEDLAKDTFEDYVVHLQEKAKEKERKREEEKARKEKEREEREKRKEKEKERKEKDRDRDREKRKERSKKEESDDETMDATDSHGYKDDNRKDKEKDKDRKHRKRHHDAGDDVSSDRDDDKDRRHRKRHHDTADDVSSDRDDDRERRHRKRHHDNADDVSSDRDDKEEHKKSRRHGSDRKKSRKHEYSPDSDGESRHKRHKRDHRDGRRNSTHDELEDGELGEDGEIQ*

Click here to download the sequence:
Link to NCBI Protein BLAST