Transcript Information: R_Transcript_219979.p1


Annotated TAIR IDAT5G11010.2
Annotated Gene NamePre-mRNA cleavage complex II protein family
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:3484176-3486067 | Forward length=368
E-Value5E-29
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.42560068411415
Replicate 30.77387627014029
Condition 2: 8 Hour
Replicate 10
Replicate 20.45326111840241
Replicate 31.1038141593479
Condition 3: 24 Hour
Replicate 11.0858422337428
Replicate 20.74511009765464
Replicate 30.59155958613236


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_219979.p1 GENE.R_Transcript_219979~~R_Transcript_219979.p1 ORF type:5prime_partial len:148 (+),score=30.09,CLP1_P|PF16575.1|8.1e-20 R_Transcript_219979:1-444(+)
GTCACAGAAAAAAACACTGGGGCGGCAGATATACTCCTTTTCTCTCACCACCAAACTCGCAGGACAAACACGAAACTCACGACAAAGACAGAGAACAGAGAGATGGAAGCTGTAGAAGCTGTAGGAGAAACCCAATCACCCAACATACTCATACCAGAAGAATGGTCTGTTGCTGCTGAATCCATTGCCTATGATTCCTCCACTTCTATTCCTCCTATTGCTTTGATTTGTGGAGCTAAGAACAGTGGCAAAACCACCTTCTCTCGTTACCTCCTCAACATTCTCCTTCTCAGGTACAAAAGAATCGCTTATTTGGACACAGATGTGGGACAGCCAGAGTTCACTCCCCCTGGTTGTTTATCCCTTACTGTAATTGAGAAGGCAACTCCAGATGCTACTTCTTTGGTGACATTTCTTCAAAAAGGGATCCTGAAACATACTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_219979.p1 GENE.R_Transcript_219979~~R_Transcript_219979.p1 ORF type:5prime_partial len:148 (+),score=30.09,CLP1_P|PF16575.1|8.1e-20 R_Transcript_219979:1-444(+)
VTEKNTGAADILLFSHHQTRRTNTKLTTKTENREMEAVEAVGETQSPNILIPEEWSVAAESIAYDSSTSIPPIALICGAKNSGKTTFSRYLLNILLLRYKRIAYLDTDVGQPEFTPPGCLSLTVIEKATPDATSLVTFLQKGILKHT*

Click here to download the sequence:
Link to NCBI Protein BLAST