Transcript Information: R_Transcript_22001.p1


Annotated TAIR IDAT1G58370.1
Annotated Gene Nameglycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein
Annotated Gene Symbol(s)RXF12, ATXYN1
Annotation TypeOrtholog
Chromosome Positionchr1:21684751-21688209 | Forward length=917
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.9721213995182
Replicate 24.6609123545693
Replicate 36.1504348302566
Condition 2: 8 Hour
Replicate 14.1413725069337
Replicate 25.034744008639
Replicate 35.8906389645442
Condition 3: 24 Hour
Replicate 16.5039031046773
Replicate 25.4322149275946
Replicate 36.756035696167


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_22001.p1 GENE.R_Transcript_22001~~R_Transcript_22001.p1 ORF type:complete len:946 (+),score=163.80,CBM_4_9|PF02018.13|5.6e-24,CBM_4_9|PF02018.13|6.3e-19,CBM_4_9|PF02018.13|4.6e-20,Glyco_hydro_10|PF00331.16|3.9e-46 R_Transcript_22001:232-3069(+)
ATGACCTATAAAATGACCAAGTTTCTGGGTTGTTGCTTCGCACTTCGACCCCAGAAAAGTAAAACCAAGGCCCATCTGGGATCTAGAGAGACAATGGAGCACCCAAAAGAGAGCAGCAGCCACATTACTGAGGAAGAGAAAATGAGAGGAGATATGACCAGTACAAGGAGTGATGACACAGAAAATATCATACTGAACCATGATTTCTCCCAAGGCCTGTATTCATGGCATTCCAACTGCTGCAATGCGTACAAAGTTTCAGCTGAGGCCGGACATCCAGAAGGAACTACAACAAGCTTGGGTGGTGGCTATGTTGCTGTTACAAATAGGACAGAGTGTTGGCAAGGATTGGAACAAGATATATCCAGCAGAGTCTCTTCAGGTTGTGAATACAAAGTTTCTGCGTGTGTTGCAGTATCAGGATCTGAAGGTCCAAATGATGTTCAAGCCACGTTAAAATTAGAGTATAATGGATCTGACACCAAGTATTTGTTCATCGGAAGGGTAACGGCTTCAAAGGAGCGGTGGGAAAAATTGGAAGGCACTTTCACTCTTTCATCGATGCCTGACCGTGTTGTGTTCTATCTGGAAGGGCCATGTCCTGGTGTTGACCTGTTTATAAAATCAGTTGTTGTTTCCTGCCCCAGCTCCACTGTACATGAAAATGAGAGATGTTCTGATGGAGATGAGAACATAATTATAAACCCCAGTTTTGAGGATGGCCTCAATAGCTGGTCTGGAAGAGGCTGCAAAATCGTGCTGCATGATTCTATGGCAGGCGGAAAGATTGTTCCACAGTCAGGCAAGGTCTTTGCTGCAGCAAACGAACGCACACAGTTTTGGAATGGAATTCAGCAGGACATCACAGGGAGAGTAAAGAGAAAGCTCGCTTATGAGGTTACTGCAATTGTCCGGATATATGGTAATAATGTCACCAGCGCAGATGTCCGAGCCACTCTGTATGTTCAAACAACAGATAAGCGTGAACAGTATATTGGTATCTCAAGTGTTAAAGCAACAGACAAAGATTGGGCGCAGATTCAGGGCAAGTTTCTTATAAATGGTACTCCATCAATTGTGGTCATCTACTTGGAAGGACCAGCTCCTGGTACTGACATTCTTCTCAACAGTATGGTAGTAAAGCATGCACAGAAAACTCCTCCGTCTCCTCCACCTATTGTTGAGAATGCTGCTTTTGGAGTGAACATCATTCAGAACAGTGAGCTCAGTGACGGTACCAATGGCTGGTTTCCTCTTGGCAATTGCACCCTAGGAGTTGGTACTGGTTCACCACATATTCTTCCTTCAATGGCCAGTGGCTCTCTTGGACCTCACGAGCCTTTAAGTGGACGTTGCATTCTTGTCACAAATCGCACACAGAACTGGATGGGTCCTGCACAAATTATAACTGACAGGCTGAAGCTCTTTCTCACATATCAGGTATCTGCCTGGGTTAAACTAGGGTCTGGTGTTTCTGGGCCCCAAAATGTCAATGTTGCCCTCAGTGTGGATGGTCAGTGGGTCAATGGAGGTCAAGTTGAGATCACTGATGACAGATGGCATGAAATTGGAGGGTCTTTTCGGATTGAGAAGCAGCCGTCAAAAGTTATGGTTTATGTTCAGGGCCCAGGCCCTGGAGTCAACTTTATGCTCGCCAGTCTCCAGATTTTCGCTGTTGATCGAAAATCAAGGTTCAAACATCTGAGGAGGCAGACTGACAAGATACGTAAACGTGATGTGGTCTTGAAACTTGCTGGCGAAACTGGTTCATTTGGCGCTTTTGTGAAAGTCAAACAGATAAAGAATAGCTTCCCTTTTGGTTCCTGCATTAACAGAACCAACATAGACAATGAAGACTTTGTGGACTTCTTTCTAAAGAACTTCAACTGGGCTGTGTTTGGAAATGAACTCAAGTGGTACTGGACTGAGTCCCAGAAAGGTAATTTCAACTACAGGGATGCTGATGAGATGTTGGATTTGTGCCAAAAAAACAACATAGAAACTCGGGGGCATTGCATCTTCTGGGAAGTGGAAGACACAGTCCAATCATGGGTCAAGGCCCTTAATAAAAATGACCTAATGAAGGCAGTACAAAATCGTTTGACAGGCCTCCTTACCCGCTACAAGGGGAAGTTCCGGCACTATGATGTGAACAACGAGATGCTACATGGATCTTTCTACCAGGACCGTCTGGGTAAGGATATCCGAGCCAACATGTTCAAGACTGCCAACAAAATAGACCCATCTGCCCTACTATTTGTCAATGATTACCATGTTGAGGATGGATGTGATACAAGGTCAAGCCCCGAGAAGTACATTGAGCAAGTGCTGAACCTGCAAGAGCAAGGTGCACCTGTCGGAGGTGTAGGAATTCAAGGCCATATTGATAGTCCTGTAGGCTCAATCGTCTGTTCAGCCCTGGATAAGTTGGGAATTCTCGGACTTCCAATCTGGTTTACTGAGCTCGATGTTTCTTCCATTAACGAACACATAAGAGCCGATGATTTGGAGGTTATGCTTAGAGAGGCCTACGCTCATCCAGCAGTTGAAGGTGTCATGTTATGGGGGTTCTGGGAGTTGTTTATGAGCAGAGATAATTCACACCTTGTGAATGCTGAAGGTGATCTGAATGAGGCTGGTAAGAGGTATCTCCAACTTAAGCATGAATGGCTAACTCATGCTCATGGTCATACTGACGATGGCCAGTTTTGCTTCAGGGGCTTCCATGGCACTTATGAGGTCGAAATTGCTTTGTTCGAAAAGACAATTACCAAGACATTTGTGGTCGACAAGGGCGATTCTCCACTCGTTGTGCCCATAGATCTGTCATACTGTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_22001.p1 GENE.R_Transcript_22001~~R_Transcript_22001.p1 ORF type:complete len:946 (+),score=163.80,CBM_4_9|PF02018.13|5.6e-24,CBM_4_9|PF02018.13|6.3e-19,CBM_4_9|PF02018.13|4.6e-20,Glyco_hydro_10|PF00331.16|3.9e-46 R_Transcript_22001:232-3069(+)
MTYKMTKFLGCCFALRPQKSKTKAHLGSRETMEHPKESSSHITEEEKMRGDMTSTRSDDTENIILNHDFSQGLYSWHSNCCNAYKVSAEAGHPEGTTTSLGGGYVAVTNRTECWQGLEQDISSRVSSGCEYKVSACVAVSGSEGPNDVQATLKLEYNGSDTKYLFIGRVTASKERWEKLEGTFTLSSMPDRVVFYLEGPCPGVDLFIKSVVVSCPSSTVHENERCSDGDENIIINPSFEDGLNSWSGRGCKIVLHDSMAGGKIVPQSGKVFAAANERTQFWNGIQQDITGRVKRKLAYEVTAIVRIYGNNVTSADVRATLYVQTTDKREQYIGISSVKATDKDWAQIQGKFLINGTPSIVVIYLEGPAPGTDILLNSMVVKHAQKTPPSPPPIVENAAFGVNIIQNSELSDGTNGWFPLGNCTLGVGTGSPHILPSMASGSLGPHEPLSGRCILVTNRTQNWMGPAQIITDRLKLFLTYQVSAWVKLGSGVSGPQNVNVALSVDGQWVNGGQVEITDDRWHEIGGSFRIEKQPSKVMVYVQGPGPGVNFMLASLQIFAVDRKSRFKHLRRQTDKIRKRDVVLKLAGETGSFGAFVKVKQIKNSFPFGSCINRTNIDNEDFVDFFLKNFNWAVFGNELKWYWTESQKGNFNYRDADEMLDLCQKNNIETRGHCIFWEVEDTVQSWVKALNKNDLMKAVQNRLTGLLTRYKGKFRHYDVNNEMLHGSFYQDRLGKDIRANMFKTANKIDPSALLFVNDYHVEDGCDTRSSPEKYIEQVLNLQEQGAPVGGVGIQGHIDSPVGSIVCSALDKLGILGLPIWFTELDVSSINEHIRADDLEVMLREAYAHPAVEGVMLWGFWELFMSRDNSHLVNAEGDLNEAGKRYLQLKHEWLTHAHGHTDDGQFCFRGFHGTYEVEIALFEKTITKTFVVDKGDSPLVVPIDLSYC*

Click here to download the sequence:
Link to NCBI Protein BLAST