Transcript Information: R_Transcript_221233.p1


Annotated TAIR IDAT3G21000.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:7363921-7365138 | Forward length=405
E-Value1E-06
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.59118901877632
Replicate 20.39669123593546
Replicate 30.27821948497351
Condition 2: 8 Hour
Replicate 10.39653222586632
Replicate 20.36211954398681
Replicate 30.44092981264098
Condition 3: 24 Hour
Replicate 10.49571513582087
Replicate 20.17858509223139
Replicate 30.62029932311045


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_221233.p1 GENE.R_Transcript_221233~~R_Transcript_221233.p1 ORF type:3prime_partial len:741 (+),score=138.89,UBN2|PF14223.2|9.5e-36,rve|PF00665.22|1.6e-26,UBN2_2|PF14227.2|1.6e-16,UBN2_2|PF14227.2|1.3e+04,UBN2_2|PF14227.2|57,gag_pre-integrs|PF13976.2|6.3e-14,rve_3|PF13683.2|1.3e-05 R_Transcript_221233:152-2371(+)
ATGAGTGCACCCACTAAGAGAGAAGAAGGGCTTTCAAGTACTCGTCCTCCTTACTTCAATGGTGGTCACTATAGTTGGTGGAAGAAGCAAATGGAAATTTACGTGCAAGCTGAAGATTTCCAACTTTGGAACATCACCATGAATGGTCCATTGGCCATTACATACAAGGACGACAAAGGGAAGGAAGTTACTACTCCTCCCTCCTTGTATGATGAGAATGATTTCCGGAAATTGGAAAAGAATGCTAGAGCAATGAAGCTCCTATATTATGCTCTTGGCCCGGATGAGTACAACCGCATTGCAAGTTGTACCACTGCCAAGGAAATCTGGGATATGCTTCAAGTGACCCATGAAGGAACCTCTCAAGTGAAGCAATCACGCATAGAACTTCTCATGAGGGACTATGAGCTTTTCACTATGGCAAAAGATGAATCAATCAAGGAAATGAACACAAGACTCACCAACATAGTGAATGAGCTTAGATCTCTAGGCAAGAATCTTTCTACCGAAGAACTTGTGAGGAAAGTTCTAAGGGTGTTGCCGGGCATTTGGCAACCCAAAGTGACGGCCATAAACGAAGCAAAGGACTTGAGTAAGCTCGCTCTTGAAGACCTAATTGGGAACTTGGAAACGCATGAACTAACTCTCAATTTGCTATACAAGGCTTCCATGAGTAAAGATAAGGGCATTGCTCTAAAAGTTGCTCAAAGTGATGAAGATGATTCAGACTTTGAAGAAGAGGAAATTGCCATGCTTGCAAGAAGATTTAGAAAGTTCATCAAGCTCAATAAAGGTTACAACAAGAAAGGTGGCTCAAGCAAAGGAAAGAATGTCCCAAAGAACAATTCTGAAGGATGTTTTAAGTGTGGTAAACATGATCACCGAATCAAAGAATGCCCACTGTGGGAAGAAGAAAATCAGCGGAACCGGGTTCCTGCCTTCCAGAACCAGAAGCACAAAAAGGCTTTCAAACGAGAATTCAAGAAAGCTATGATGGCAGCGGCATGGGGAGACTCGGAAAGTGATGATTCGGATGATCAACCTGATGAAGCAAACTTGTGTCTCATGGCTAAAAGTGACTCCGAATCCGAGGAAGAAAGCCTCCAAGCCTTGGTGAGAGGAAACAACCATTGGTATCTTGATAGTGGTTGTTCCAAGCATATGACGGGCGACAAATCAAACTTCCTCTCCCTAACGGCCATCAAGGGTGGAAGTGTGACATTTGGTGATGACAAAAAGGGCGAAATCATAGGCGTTGGTAAAGTTGGCATCTCACCATCACACTCCATTGATAATGTGTTCTTGGTTAAAGATTTGAAGCATAATCTCTTGAGTATTTCTCAACTTTGTGACAAAGGAAATAATGTGAAATTTACCGCTAAATCTTGCTTGATAATGAACAAAGAAGGTGATGTAGTTCTTGAAGGAATTCGTCACAACAATTTATATACGGCTCTTTTGTCTAGTCTTTCCGAAAATTGCTTAACTTGCTTGAGTGTGCTTGAAAATGATCCATTATTGTGGCATAGGCGTTTAGGACATGCAAGTCTCTCACTTTTGAATAAATTGGTCTCTCAAAACTTGGTTGAAGGACTTCCTTGTATCAAGTTTAAAGATCAAAGGGTATGTGATGCATGTGCTAGAGGTAAACATGCAAGGTCTTCATTCAAGTCAATAAACTTAGTGAGCACTAGTAAACCTCTTGAACTATTACATATGGATCTTTGTGGCCCTATAACCGTCGTAAGTCGTGGTGGTAAAAGATATGTACATGTCATTGTGGATGATTACTCTAGGTTTACATGGACACTTTTTCTTGCCACTAAAGATGAAACTTTTGACATGTTTGTTACTCTTGTGAAGAGATTACAGAGAAGAACCAGGTTCCAGCTTCTAGCAATCCGAACTGATCATGGTACCGAGTTTGATAATTCTAAGTTCATTACCTATTGTGGTGAGCATGGAATTGAACACAACTTCTCTGCCCCTCGTACTCCTCAACAAAATGGGGTAGTTGAGAGGAAGAATCGCACCTTGGAAGAAATGGCTAGAACTATGTTGTTGGCAAGTTCTTTACCAAGGAACTTTTGGGCGGAGGCGGTCAATACGGCATGCTACATCATCAATCGGGCCATGATAAGACCATTGCTTAAGAAAACCCCATATGAGCTTTTTAAAGGAAGAAAACCCAACATTATGCATTTGAAAATTTTTGGTTGC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_221233.p1 GENE.R_Transcript_221233~~R_Transcript_221233.p1 ORF type:3prime_partial len:741 (+),score=138.89,UBN2|PF14223.2|9.5e-36,rve|PF00665.22|1.6e-26,UBN2_2|PF14227.2|1.6e-16,UBN2_2|PF14227.2|1.3e+04,UBN2_2|PF14227.2|57,gag_pre-integrs|PF13976.2|6.3e-14,rve_3|PF13683.2|1.3e-05 R_Transcript_221233:152-2371(+)
MSAPTKREEGLSSTRPPYFNGGHYSWWKKQMEIYVQAEDFQLWNITMNGPLAITYKDDKGKEVTTPPSLYDENDFRKLEKNARAMKLLYYALGPDEYNRIASCTTAKEIWDMLQVTHEGTSQVKQSRIELLMRDYELFTMAKDESIKEMNTRLTNIVNELRSLGKNLSTEELVRKVLRVLPGIWQPKVTAINEAKDLSKLALEDLIGNLETHELTLNLLYKASMSKDKGIALKVAQSDEDDSDFEEEEIAMLARRFRKFIKLNKGYNKKGGSSKGKNVPKNNSEGCFKCGKHDHRIKECPLWEEENQRNRVPAFQNQKHKKAFKREFKKAMMAAAWGDSESDDSDDQPDEANLCLMAKSDSESEEESLQALVRGNNHWYLDSGCSKHMTGDKSNFLSLTAIKGGSVTFGDDKKGEIIGVGKVGISPSHSIDNVFLVKDLKHNLLSISQLCDKGNNVKFTAKSCLIMNKEGDVVLEGIRHNNLYTALLSSLSENCLTCLSVLENDPLLWHRRLGHASLSLLNKLVSQNLVEGLPCIKFKDQRVCDACARGKHARSSFKSINLVSTSKPLELLHMDLCGPITVVSRGGKRYVHVIVDDYSRFTWTLFLATKDETFDMFVTLVKRLQRRTRFQLLAIRTDHGTEFDNSKFITYCGEHGIEHNFSAPRTPQQNGVVERKNRTLEEMARTMLLASSLPRNFWAEAVNTACYIINRAMIRPLLKKTPYELFKGRKPNIMHLKIFGC

Click here to download the sequence:
Link to NCBI Protein BLAST