Transcript Information: R_Transcript_221234.p1


Annotated TAIR IDAT3G21000.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:7363921-7365138 | Forward length=405
E-Value8E-07
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.32125211280305
Replicate 20.067188161332154
Replicate 30.25655546107691
Condition 2: 8 Hour
Replicate 10
Replicate 20.14310964378359
Replicate 30.23234061594095
Condition 3: 24 Hour
Replicate 10.36732491564327
Replicate 20.24701889957447
Replicate 30.17510163749518


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_221234.p1 GENE.R_Transcript_221234~~R_Transcript_221234.p1 ORF type:complete len:625 (+),score=133.76,UBN2|PF14223.2|7.3e-36,UBN2|PF14223.2|1e+03,UBN2_2|PF14227.2|1.2e-16,UBN2_2|PF14227.2|9.8e+02,UBN2_2|PF14227.2|9.4e+02,zf-CCHC|PF00098.19|0.00079,zf-CCHC|PF00098.19|0.0032 R_Transcript_221234:152-2026(+)
ATGAGTGCACCCACTAAGAGAGAAGAAGGGCTTTCAAGTACTCGTCCTCCTTACTTCAATGGTGGTCACTATAGTTGGTGGAAGAAGCAAATGGAAATTTACGTGCAAGCTGAAGATTTCCAACTTTGGAACATCACCATGAATGGTCCATTGGCCATTACATACAAGGACGACAAAGGGAAGGAAGTTACTACTCCTCCCTCCTTGTATGATGAGAATGATTTCCGGAAATTGGAAAAGAATGCTAGAGCAATGAAGCTCCTATATTATGCTCTTGGCCCGGATGAGTACAACCGCATTGCAAGTTGTACCACTGCCAAGGAAATCTGGGATATGCTTCAAGTGACCCATGAAGGAACCTCTCAAGTGAAGCAATCACGCATAGAACTTCTCATGAGGGACTATGAGCTTTTCACTATGGCAAAAGATGAATCAATCAAGGAAATGAACACAAGACTCACCAACATAGTGAATGAGCTTAGATCTCTAGGCAAGAATCTTTCTACCGAAGAACTTGTGAGGAAAGTTCTAAGGGTGTTGCCGGGCATTTGGCAACCCAAAGTGACGGCCATAAACGAAGCAAAGGACTTGAGTAAGCTCGCTCTTGAAGACCTAATTGGGAACTTGGAAACGCATGAACTAACTCTCAATTTGCTATACAAGGCTTCCATGAGTAAAGATAAGGGCATTGCTCTAAAAGTTGCTCAAAGTGATGAAGATGATTCAGACTTTGAAGAAGAGGAAATTGCCATGCTTGCAAGAAGATTTAGAAAGTTCATCAAGCTCAATAAAGGTTACAACAAGAAAGGTGGCTCAAGCAAAGGAAAGAATGTCCCAAAGAACAATTCTGAAGGATGTTTTAAGTGTGGTAAACATGATCACCGAATCAAAGAATGCCCACTGTGGGAAGAAGAAAATCAGCGGAACCGGGTTCCTGCCTTCCAGAACCAGAAGCACAAAAAGGCTTTCAAACGAGAATTCAAGAAAGCTATGATGGCAGCGGCATGGGGAGACTCGGAAAGTGATGATTCGGATGATCAACCTGATGAAGCAAACTTGTGTCTCATGGCTAAAAGTGACTCGGAGTCCGAGGAGGAAAGCCTCCAAGTAAGTATTGAAAATTTTATGAATAAAGCTCATAGATTTGGCAATAACAAGTTGGTTGAAATGATGAATGTTTTATTTGATGACTACATGAATGTTTCTGGTGAAAGAGACTTGCTAAATGAAGCTTTTAGGAGCCTTAGAATGGACTTTAAAGAACTTAGCCATGAGAAGACGTCCCTTGAATGTGTTAATAAAGATTTACTTGCTAAACTGTCTGAAATGGAAGAATCAGGTTCTGTCACTGAGAAAAATTTGCTTGCCTTATCACTAGAACTTGAATCACTTAAGTCCACGAAGGTTAATGAATCACCGCAAGCTAGTAACAGCATTGAATATGCTGGAATTAGTGATTTGGAGCTGATTGAAGTTAAAGTAAAACTTGGAGACCAACTTGAGAAATGCAATGAACTTCAACTTAAGCTTGACCGGACTCTTGGTGAACTTGACAAACTCAAGAAGTGGGAACAATCTTCTAAAGCCCTAACTTGGTTAAATGAACATCACAGTAAATTTAGACAAGGCTTAGGATATAAGAAGCAAAGAACACCTTGGAACCCTAGAAGCAAGTATGTTGATCTTCCATGTAATAGACTTTGTTTTCATTGTGGCAAGAATGGACATTATCGTAGAGAATGCTTGGCTAGGATTAAGGCTCATGAAAAGAGTGGCTTGCATGTTAGACAAATGTGGATAGTTAAGAACACATTGTTCCATGGCACTAGAGAACCGGGACCCAAACAAGTTTGGGTTCCCAAATCTAACCCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_221234.p1 GENE.R_Transcript_221234~~R_Transcript_221234.p1 ORF type:complete len:625 (+),score=133.76,UBN2|PF14223.2|7.3e-36,UBN2|PF14223.2|1e+03,UBN2_2|PF14227.2|1.2e-16,UBN2_2|PF14227.2|9.8e+02,UBN2_2|PF14227.2|9.4e+02,zf-CCHC|PF00098.19|0.00079,zf-CCHC|PF00098.19|0.0032 R_Transcript_221234:152-2026(+)
MSAPTKREEGLSSTRPPYFNGGHYSWWKKQMEIYVQAEDFQLWNITMNGPLAITYKDDKGKEVTTPPSLYDENDFRKLEKNARAMKLLYYALGPDEYNRIASCTTAKEIWDMLQVTHEGTSQVKQSRIELLMRDYELFTMAKDESIKEMNTRLTNIVNELRSLGKNLSTEELVRKVLRVLPGIWQPKVTAINEAKDLSKLALEDLIGNLETHELTLNLLYKASMSKDKGIALKVAQSDEDDSDFEEEEIAMLARRFRKFIKLNKGYNKKGGSSKGKNVPKNNSEGCFKCGKHDHRIKECPLWEEENQRNRVPAFQNQKHKKAFKREFKKAMMAAAWGDSESDDSDDQPDEANLCLMAKSDSESEEESLQVSIENFMNKAHRFGNNKLVEMMNVLFDDYMNVSGERDLLNEAFRSLRMDFKELSHEKTSLECVNKDLLAKLSEMEESGSVTEKNLLALSLELESLKSTKVNESPQASNSIEYAGISDLELIEVKVKLGDQLEKCNELQLKLDRTLGELDKLKKWEQSSKALTWLNEHHSKFRQGLGYKKQRTPWNPRSKYVDLPCNRLCFHCGKNGHYRRECLARIKAHEKSGLHVRQMWIVKNTLFHGTREPGPKQVWVPKSNP*

Click here to download the sequence:
Link to NCBI Protein BLAST