Transcript Information: R_Transcript_221236.p1


Annotated TAIR IDAT3G21000.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:7363921-7365138 | Forward length=405
E-Value8E-07
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30.14660312061538
Condition 2: 8 Hour
Replicate 10.078354767831185
Replicate 20.17888705472948
Replicate 30.11617030797048
Condition 3: 24 Hour
Replicate 10
Replicate 20.070576828449847
Replicate 30.070040654998071


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_221236.p1 GENE.R_Transcript_221236~~R_Transcript_221236.p1 ORF type:complete len:625 (+),score=134.07,UBN2|PF14223.2|7.3e-36,UBN2|PF14223.2|9.1e+02,UBN2_2|PF14227.2|1.2e-16,UBN2_2|PF14227.2|1.1e+03,zf-CCHC|PF00098.19|0.00079,zf-CCHC|PF00098.19|0.0032 R_Transcript_221236:152-2026(+)
ATGAGTGCACCCACTAAGAGAGAAGAAGGGCTTTCAAGTACTCGTCCTCCTTACTTCAATGGTGGTCACTATAGTTGGTGGAAGAAGCAAATGGAAATTTACGTGCAAGCTGAAGATTTCCAACTTTGGAACATCACCATGAATGGTCCATTGGCCATTACATACAAGGACGACAAAGGGAAGGAAGTTACTACTCCTCCCTCCTTGTATGATGAGAATGATTTCCGGAAATTGGAAAAGAATGCTAGAGCAATGAAGCTCCTATATTATGCTCTTGGCCCGGATGAGTACAACCGCATTGCAAGTTGTACCACTGCCAAGGAAATCTGGGATATGCTTCAAGTGACCCATGAAGGAACCTCTCAAGTGAAGCAATCACGCATAGAACTTCTCATGAGGGACTATGAGCTTTTCACTATGGCAAAAGATGAATCAATCAAGGAAATGAACACAAGACTCACCAACATAGTGAATGAGCTTAGATCTCTAGGCAAGAATCTTTCTACCGAAGAACTTGTGAGGAAAGTTCTAAGGGTGTTGCCGGGCATTTGGCAACCCAAAGTGACGGCCATAAACGAAGCAAAGGACTTGAGTAAGCTCGCTCTTGAAGACCTAATTGGGAACTTGGAAACGCATGAACTAACTCTCAATTTGCTATACAAGGCTTCCATGAGTAAAGATAAGGGCATTGCTCTAAAAGTTGCTCAAAGTGATGAAGATGATTCAGACTTTGAAGAAGAGGAAATTGCCATGCTTGCAAGAAGATTTAGAAAGTTCATCAAGCTCAATAAAGGTTACAACAAGAAAGGTGGCTCAAGCAAAGGAAAGAATGTCCCAAAGAACAATTCTGAAGGATGTTTTAAGTGTGGTAAACATGATCACCGAATCAAAGAATGCCCACTGTGGGAAGAAGAAAATCAGCGGAACCGGGTTCCTCCCATCCAGAATCAGAAGCACAAAAAGGTCTCCAAACGGGAATTCAAGAACGCTATGCTGGCTGCGGCATGGAGAGATTCTGACAGTGAAGACTCGGATGATCATGCTGATGAAGCCAACCTATGTCTCATGGCAAGGAGCGACTCGGATTCAGAGGAAGAAAGTCTCCAAGTAAATATGGAAAAGTTCATCTCTAAAGCTCACAAACTAGGCAAAGGTAGATTGATTGAGGTATTGAATGTCTTGTTTGATGATTACATCAATATTTCTGCTGAAAAGGACATGCTCAATGATGCATTTGGTAGTCTGAAAATGGACTTTAAGGATTTAAACACTCAAAAAGCGTCACTTGAATGCATTAATCAAGATTTACTTGCTAAAATTGCTGAAATGGAGGAAACAGGTTCTGAAACAGAGAAAACCATGCATGCTTTGTCTCGAGAACTTGAGTCCATTAAATCTTCTAATTCTCTTTGCATGTCTTTGACTAATGATGATTTAGAGTACTCTGGAATTAGTGACTTGGAACTAATTGATGTGAAGTCGAAACTTGAAACTAAGATTGAAGAATGCAACCAACTTCAACATGAACTTGATAAAACTTTTAAGGAGCTTTGCAAACTTAGGAAATGGGAACAATCTTCCAAAGCTTTAACTTGGCTAAATGAAAACCACAGCAAGTTTAGACAAGGTTTAGGATATAAGAAGGAAAGAATTCTTTGGAATCCAAGGAGTAAGTATGTTGACCTACCTTGCAATAGACTTTGTTTTCATTGTGGAAAGAATGGCCACTACCGTAGAGAATGCTTGGCTAGGTTCAAAGCTTATGAGAAGAATGGTTTGCATGTGAAACAAATTTGGGTAGTTAAGAATACACTATTTCATGGCACTAGAGAATCGAGACCCAAACAAGTTTGGGTTCCCAAATCTAACCCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_221236.p1 GENE.R_Transcript_221236~~R_Transcript_221236.p1 ORF type:complete len:625 (+),score=134.07,UBN2|PF14223.2|7.3e-36,UBN2|PF14223.2|9.1e+02,UBN2_2|PF14227.2|1.2e-16,UBN2_2|PF14227.2|1.1e+03,zf-CCHC|PF00098.19|0.00079,zf-CCHC|PF00098.19|0.0032 R_Transcript_221236:152-2026(+)
MSAPTKREEGLSSTRPPYFNGGHYSWWKKQMEIYVQAEDFQLWNITMNGPLAITYKDDKGKEVTTPPSLYDENDFRKLEKNARAMKLLYYALGPDEYNRIASCTTAKEIWDMLQVTHEGTSQVKQSRIELLMRDYELFTMAKDESIKEMNTRLTNIVNELRSLGKNLSTEELVRKVLRVLPGIWQPKVTAINEAKDLSKLALEDLIGNLETHELTLNLLYKASMSKDKGIALKVAQSDEDDSDFEEEEIAMLARRFRKFIKLNKGYNKKGGSSKGKNVPKNNSEGCFKCGKHDHRIKECPLWEEENQRNRVPPIQNQKHKKVSKREFKNAMLAAAWRDSDSEDSDDHADEANLCLMARSDSDSEEESLQVNMEKFISKAHKLGKGRLIEVLNVLFDDYINISAEKDMLNDAFGSLKMDFKDLNTQKASLECINQDLLAKIAEMEETGSETEKTMHALSRELESIKSSNSLCMSLTNDDLEYSGISDLELIDVKSKLETKIEECNQLQHELDKTFKELCKLRKWEQSSKALTWLNENHSKFRQGLGYKKERILWNPRSKYVDLPCNRLCFHCGKNGHYRRECLARFKAYEKNGLHVKQIWVVKNTLFHGTRESRPKQVWVPKSNP*

Click here to download the sequence:
Link to NCBI Protein BLAST