Transcript Information: R_Transcript_221237.p1


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value6E-07
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.030070775872683
Replicate 20
Replicate 30.11321287115067
Condition 2: 8 Hour
Replicate 10.20169575739082
Replicate 20
Replicate 30.089711419870117
Condition 3: 24 Hour
Replicate 10.1134652746015
Replicate 20.036334858139337
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_221237.p1 GENE.R_Transcript_221237~~R_Transcript_221237.p1 ORF type:complete len:607 (-),score=104.86,rve|PF00665.22|2e-27,gag_pre-integrs|PF13976.2|2.1e-13,rve_3|PF13683.2|1e-05 R_Transcript_221237:102-1922(-)
ATGACGGGCGACAAATCAAACTTCCTCTCCCTAACGGCCATCAAGGGTGGAAGTGTGACATTTGGTGATGACAAAAAGGGCGAAATCATAGGTGTTGGTAAAGTTGGCATCTCACCATCATACTCCATTGATAATGTGTTCTTGGTTAAAGGTTTGAAGCATAATCTCTTGAGTATTTCTCAACTTTGCGACAAAGGAAACAATGTGAAATTTACCGCTAAATCTGGCTTGATAATGAACAAAGAAGGTGATGTAATTCTTGAAGGAATTCGTCACAACAATGTGTATACGGCTCTTTTGTCTAGTCTTTCCGAAAATTGCTTAACTTGCTTGAGTGTGCTTGAAGATGATCCATTATTGTGGCATAGGCGTTTAGGACATGCAAGTCTCTCACTTTTGAATAAATTGGTCTCTCAAAACTTGGTTGAAGGACTTCATTGTATCAAGTTTAAAGACCAAAGGGTATGTGATGCTTGTGCTAGAGGTAAACATGCAAGGTCTTCATTCAAATCAATAAACTTAGTGAGCACTTCTAAACCTCTTGAGCTATTACACATGGATCTTTGTGGCCCCATGACCGTAGTAAGTCATGGTGGTAGAAGATATGTACATGTCATTGTGGATGATTACTCTAGGTTTACATGGACACTTTTTCTTGCCACTAAAGATGAAACTTTTGACATGTTTGTTGCTCTTGTGAAGAGATTACAGAAGAGAACCGGGTTCCAGCTTCTAGCAATCCGAACTGATCATGGTACCGAGTTTGATAACTCTAAGTTCATTACCTATTGTACTGAGCATGGAATAGAACACAACTTCTCTGCCCCTCGTACTCCTCAACAAAATGGGGTAGTTGAGAGGAAGAATCGAACCTTGGAGGAAATGGCTAGAGCTATGTTATTGGCAAGTTCGTTACCAAGGAACTTTTGGGCGGAAGCGGTTAATACGGCATCCTACATCATCAATCGAGCCATGATAAGACCATTGCTTAAGAAAACCCCATATGAGCTTTTTAAAGGAAGAAAACCCAACATTATGCATTTGAAAATTTTTGGTTGCAAATGTTTTGTGCATAATAATGGTAAAAATAATTTGGGTAAATTTGATGCTAGAAGTGATGAAGCTATTTTTCTTGGCTACTCTTCACATAGTAAAGCTTATAAAGTTTACAATAAAAGAACCATGCTTGTTGAAGAAAGTGTTCATGTTATCTTTGATGAGGTTGATGCTTTTGCTCATAAATTTCAGGAAGACGATGACTTTGTGATTGGATTGTTCCGAATGAAGGAAGGAGAAGTTAGTACACATCCATCTCAGAATGAAGAAGGTTCTGGTCCTGATCCAGCATCCCAAGGAAAGGAGAGCTCAGACTTAGGGGGAACTGATCCAGAGAGGTCAAAACCTTGTTCCGCCAGTCACGAGTCAGGGCCAAAAGCCTCTGGTGCTGCTCCTGAAGGCCTGGAACCCGATTCTGATGATCTGGAACGTTCTCCATCTAAGTCACTTGATGAATCCGCTGAGGCAAACCGAGAACTAGTTGATGTGAATGGTAAAATGATTCCCGTCCGAACAAACTGGAAACATAGAAGCTCTCATGAGCTTAAGAATATCTTAAGTGATATTTCTAAGGGAGTTCAAACTAGATCTCGTGTTCAAAATTTTTGTGTTTTCTTTTCATTCTTATCCTCGTCGGAACCTTCTAATTATCTTGAAGCTTTGCAGGATAGTGATTGGATCGTTGCCATGCAAGAGGAGCTTAATCAATTTGAAAGAAACAAAGTGTGGCACTTGGTTCCTAGACCCTTTGACCATAATGTTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_221237.p1 GENE.R_Transcript_221237~~R_Transcript_221237.p1 ORF type:complete len:607 (-),score=104.86,rve|PF00665.22|2e-27,gag_pre-integrs|PF13976.2|2.1e-13,rve_3|PF13683.2|1e-05 R_Transcript_221237:102-1922(-)
MTGDKSNFLSLTAIKGGSVTFGDDKKGEIIGVGKVGISPSYSIDNVFLVKGLKHNLLSISQLCDKGNNVKFTAKSGLIMNKEGDVILEGIRHNNVYTALLSSLSENCLTCLSVLEDDPLLWHRRLGHASLSLLNKLVSQNLVEGLHCIKFKDQRVCDACARGKHARSSFKSINLVSTSKPLELLHMDLCGPMTVVSHGGRRYVHVIVDDYSRFTWTLFLATKDETFDMFVALVKRLQKRTGFQLLAIRTDHGTEFDNSKFITYCTEHGIEHNFSAPRTPQQNGVVERKNRTLEEMARAMLLASSLPRNFWAEAVNTASYIINRAMIRPLLKKTPYELFKGRKPNIMHLKIFGCKCFVHNNGKNNLGKFDARSDEAIFLGYSSHSKAYKVYNKRTMLVEESVHVIFDEVDAFAHKFQEDDDFVIGLFRMKEGEVSTHPSQNEEGSGPDPASQGKESSDLGGTDPERSKPCSASHESGPKASGAAPEGLEPDSDDLERSPSKSLDESAEANRELVDVNGKMIPVRTNWKHRSSHELKNILSDISKGVQTRSRVQNFCVFFSFLSSSEPSNYLEALQDSDWIVAMQEELNQFERNKVWHLVPRPFDHNV*

Click here to download the sequence:
Link to NCBI Protein BLAST