Transcript Information: R_Transcript_221240.p1


Annotated TAIR IDAT3G21000.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:7363921-7365138 | Forward length=405
E-Value4E-06
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.029251539991537
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10.073582715473411
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_221240.p1 GENE.R_Transcript_221240~~R_Transcript_221240.p1 ORF type:complete len:624 (-),score=118.10,UBN2|PF14223.2|2.5e-35,UBN2|PF14223.2|5.1e+03,UBN2|PF14223.2|1.6e+03,UBN2_2|PF14227.2|2.2e-16,UBN2_2|PF14227.2|4.6e+03,UBN2_2|PF14227.2|2.1e+03,UBN2_2|PF14227.2|1.5e+03,zf-CCHC|PF00098.19|0.00067,zf-CCHC|PF00098.19|0.0032 R_Transcript_221240:1990-3861(-)
ATGAGTGCACCAACAAAAAGAGAAGGTCTTTCTAGTACTTGTCCTCCCTATTTTAATGGAAGTCACTATGGATGGTGGAAGAAACAAATGGAAATATATGTTCAAGCAGAAGACTTCCAACTTTGGAACATTATGATGGAGGGACCTCTGGTCATCACCCACAAGGATGAAAAAGGTATGGATGTTGTCACTCCTCCCTCCATGTATAATGAAAATGACTTTAGAAAGTTGGAAAAGAATGCTAGAGCAATGAAGCTCCTATATTATGCTCTTGGCCCGGATGAGTACAACCGCATTGCAAGTTGTACCACTGCCAAGGAAATCTGGGATATGCTTCAAGTGACCCATGAAGGAACCTCTCAAGTGAAGCAATCACGCATAGAACTTCTCATGAGGGACTATGAGCTTTTCATTATGGCAAAAGATGAATCAATCAAGGAAATGAACACAAGACTCACCAACATAGTGAATGAGCTTAGGTCTCTAGGCAAGAATCTTTCTACCGAAGAACTTGTGAGGAAAATTCTAAGGGTGTTGCCGGGCATTTGGCAACCCAAAGTGACGGCCATAAACGAAGCAAAGGACTTGAGTAAGCTCGCTCTTGAAGACCTAATTGGGAACTTGGAAACGCATGAACTAACTCTCAATTTGCTATCCAAGGCTTCCATGAGTAAAGATAAGGGCATTGCTCTAAAAGTTGCTCAAAGTGATGAAGACGACTCAGACTTAGGAGAAGAGGAAATTGCCATGCTTGCAAGAAGATTTAGAAAGTTCATCAAGCTCAATAAAGGTTACAACAAGAAAGGTGGCTCAAGCAAAGGAAAGAATGTCCCAAAGAACAATTTTGATGGATGTTTTAAGTGTGGCAAACATGATCACCGAATCAAAGAATGCCCACTGTGGGAAGAAGAAAATCAGCGGAACCGGGTTCCGCCCGTCCAGAATCAGAAGCACAAAAAGGCCTTCAAACGGGAATTCAAGAAAGCTATGATGGCTGCGGCATGGGGAGATTCAGATAATGAAGACTCGGATGATCATGCTGATGAAGCCAACCTATGTCTCATGGCATTGAGCGACTCGGATTCCGAGGAAGAAAGCCTCCAAGTAAGTATGGAAAAGTTTATTTCTAAAGCTCACAAACTTAGCAAAAGTAGATTGGTTGAATTATTGAATATTTTGTTTGATGATTATATGAGTATTTCCGCTGAAAGAGACATGTTCAATGATGCTTTTGCTAGCCTGAAAATGGACTTTAAGGATTTAAACACTCAAAAAGCGTCACTTGAATGCATTAATCAAGATCTACTTGCTAGAATTGCTGAAATGGAGGAAACAGGTTCTGAAACAGAGAAAACCATGTCTGCCTTGTCTCGAGAACTTGAGTCCATTAAATCCTCTAACTCTAGTTACAAATCCTTGACTAATGATGACTTAGAGTATTCAGGAATTAGTGACTTGGAGCTAATTGATGTGAAGTCGAAACTTGAAACTAAAATTGTAGAATGCAACCAGCTTCAACACAAACTTGATAAAACTCTTAAGGAACTTTGCAAACTTAAGAAATGGGAACAATCTTCTAAAGCTTTAATTTGGCTAAATGAAAATCACAGCAAGTTTAGACAAGGTTTAGGATATAAGAAGGAAAGAACTCCTTGGAATCCAAGGAGTAAGTATGTTGACCTACCTTGCAATAGACTTTGTTTTCATTGTGGAAAGAATGGCCACTATCGTAGAGAATGCTTGGCTAGATTCAAAGCTTATGAGAAGAATGGTTTTCATGTGAAACAAATTTGGGTAATTAAAAATACACTAGTTCATGGCACTAGCAAACCGAGACCCAAACAAGTTTGGGTTCCTAAATCTAACCCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_221240.p1 GENE.R_Transcript_221240~~R_Transcript_221240.p1 ORF type:complete len:624 (-),score=118.10,UBN2|PF14223.2|2.5e-35,UBN2|PF14223.2|5.1e+03,UBN2|PF14223.2|1.6e+03,UBN2_2|PF14227.2|2.2e-16,UBN2_2|PF14227.2|4.6e+03,UBN2_2|PF14227.2|2.1e+03,UBN2_2|PF14227.2|1.5e+03,zf-CCHC|PF00098.19|0.00067,zf-CCHC|PF00098.19|0.0032 R_Transcript_221240:1990-3861(-)
MSAPTKREGLSSTCPPYFNGSHYGWWKKQMEIYVQAEDFQLWNIMMEGPLVITHKDEKGMDVVTPPSMYNENDFRKLEKNARAMKLLYYALGPDEYNRIASCTTAKEIWDMLQVTHEGTSQVKQSRIELLMRDYELFIMAKDESIKEMNTRLTNIVNELRSLGKNLSTEELVRKILRVLPGIWQPKVTAINEAKDLSKLALEDLIGNLETHELTLNLLSKASMSKDKGIALKVAQSDEDDSDLGEEEIAMLARRFRKFIKLNKGYNKKGGSSKGKNVPKNNFDGCFKCGKHDHRIKECPLWEEENQRNRVPPVQNQKHKKAFKREFKKAMMAAAWGDSDNEDSDDHADEANLCLMALSDSDSEEESLQVSMEKFISKAHKLSKSRLVELLNILFDDYMSISAERDMFNDAFASLKMDFKDLNTQKASLECINQDLLARIAEMEETGSETEKTMSALSRELESIKSSNSSYKSLTNDDLEYSGISDLELIDVKSKLETKIVECNQLQHKLDKTLKELCKLKKWEQSSKALIWLNENHSKFRQGLGYKKERTPWNPRSKYVDLPCNRLCFHCGKNGHYRRECLARFKAYEKNGFHVKQIWVIKNTLVHGTSKPRPKQVWVPKSNP*

Click here to download the sequence:
Link to NCBI Protein BLAST