Transcript Information: R_Transcript_222231.p1


Annotated TAIR IDAT5G09880.1
Annotated Gene NameSplicing factor, CC1-like
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:3081646-3085179 | Reverse length=527
E-Value6E-26
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.4698991480529
Replicate 27.1749947465767
Replicate 38.2398336676807
Condition 2: 8 Hour
Replicate 19.8648088996096
Replicate 211.019571267059
Replicate 310.316383014465
Condition 3: 24 Hour
Replicate 112.965380340826
Replicate 27.6955399726115
Replicate 311.494981598155


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_222231.p1 GENE.R_Transcript_222231~~R_Transcript_222231.p1 ORF type:complete len:278 (-),score=90.83,RRM_1|PF00076.18|4.4e+03,RRM_1|PF00076.18|8.5e-06 R_Transcript_222231:175-1008(-)
ATGGATTTCGACGAGTACGAATATTTAGAGAAGGCAGTGGAGGATCCAATTCCAGACTCAAAATCGAAATCGAAATCGAGCAAAGAAAGCAGCGAGAAGAGAGAGAGAGGCTATCGAAAGCGAGAAGAAGACGACGAACATCGTCACGATAATGAAGGAGAAGAGGAAGAGAGGAGAAGGAAGAAATCGAGGAGCGAAGAGGAGAATGGCGGAGGAGAGAGAAGGAGAGAGGAGAGAGAGAGGTCTGAGAGGAGGAGAGAGAAAGAGGATAGACACAGAAGTGGTGATAGGGATGGAGAGAGGAGAGACAGGGATAGGGATAGGGATAGGGAGAGAGAGAAGGAGAGAGAGAGGAGGGAGAGGAGGGAAAGAGAGAAGGAAAAGGAGAGGGAAAGAGAGCGGTCGAGGCGGAGCAGCAGTCGGTCCAGGCGTCATGATAGCCGGGAGAGAGAGAGGGAGAGGGAGAGAGAGAGGGAGAGAGAGTTGAGAGAGCTTGAGATTAGGGATAGCAGGAGATTCAAGGAAAAGAAAGAAGCAGTGGAACCTGAAGCTGATCCAGAGAGGGACCAGAGAACTGTTTTTGCCTACCAGATGCCTCTGAAGGCGACTGAGCGAGATGTTTATGAATTCTTCTCAAAAGCTGGAAAGGTGAGGGATGTCAGATTGATCATGGACCGGAATTCACGACGGTCAAAAGGGGTTGGCAATGCGATAAAGATTTCCATGATGAGGGATGATGGGAATACCTTGCTCTCATGTTTAATCAATTCATGCAGCATTGTGAAGGTAGATGACATGAACCTGAGTCTATCTTTTTATTTTCCTTATCTTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_222231.p1 GENE.R_Transcript_222231~~R_Transcript_222231.p1 ORF type:complete len:278 (-),score=90.83,RRM_1|PF00076.18|4.4e+03,RRM_1|PF00076.18|8.5e-06 R_Transcript_222231:175-1008(-)
MDFDEYEYLEKAVEDPIPDSKSKSKSSKESSEKRERGYRKREEDDEHRHDNEGEEEERRRKKSRSEEENGGGERRREERERSERRREKEDRHRSGDRDGERRDRDRDRDREREKERERRERREREKEKERERERSRRSSSRSRRHDSRERERERERERERELRELEIRDSRRFKEKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGNAIKISMMRDDGNTLLSCLINSCSIVKVDDMNLSLSFYFPYL*

Click here to download the sequence:
Link to NCBI Protein BLAST