Transcript Information: R_Transcript_222628.p1


Annotated TAIR IDAT2G19070.1
Annotated Gene Namespermidine hydroxycinnamoyl transferase
Annotated Gene Symbol(s)SHT
Annotation TypeHomolog
Chromosome Positionchr2:8260185-8261958 | Reverse length=451
E-Value6E-115
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.81729675916651
Replicate 20.13430469349444
Replicate 30.87914984377557
Condition 2: 8 Hour
Replicate 10.26104333632458
Replicate 20.85820015595169
Replicate 30.27091956149831
Condition 3: 24 Hour
Replicate 10.73425822689885
Replicate 20.28215683015664
Replicate 30.46668879929419


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_222628.p1 GENE.R_Transcript_222628~~R_Transcript_222628.p1 ORF type:complete len:469 (+),score=53.39,Transferase|PF02458.11|3e-94 R_Transcript_222628:25-1407(+)
ATGGGGTTGAGAATAAAGGGTAGGCATATAGTGAAGCCAACGGAGCCAACATGGAATGGCATCCTCCCCTTATCAGAATTAGATCAAATAGGAGTCATTACTCACACCAGCATTGTGTACATCTACAATAAACCCACCCAAGACTCAATTCTTTCATCTTATGATAAAATCTTCACGACCCTTATACGGTCATTAGGTCAAGCCCTGGTCCAATTCTACCCCTTGGCTGGCCGGATCCACTGGCTAGCTGGGGGGCGGTTCGAGCTAGAGTGCAACGCCATGGGCGTCGCACTCGTCGAGGCTGAGATTGATCAACAAGCTCATAACCACATCATGGGTGGTGATTTCACATGTCTTGTTCCAAACATAGACTATGGAAAACTACCAATGGAAGAAATTCCTCTATTACTAGTCCAAGTGAGTCGTTTCAAATGTGGTGGTATTGGGCTTGGGACATCCATTTCCCATGCCATCACCGATGGGCTTGGTGCCTTCCATTTCCATCAGAAATGGGCCGAGTTAGCACATTATGATCAACATTTAGATCAGGTTGTCCTGCCTTATCTGGATCGTAGTGTCCTACAAGCTCGAAAGAAGGGTAAATATGACATTTTTCCTTTTGCTCAACATGAAGTTGACTCTTTTAGTAGGCTTCCTACGTTAATTGGAAAAGAGGATAATTTTGAAGAGAGAAGGAAGGAAACAATTGCAACAACGTTAGTATTGACTAAGAGTCAAATGGAAAAGCCCAAGAAGATGGCTAATAAGGAAAGAGTTATTATAAACCATGAAATTGAGCGTAACTATGGAAGGTTCGAAGTTGTAGCTGCTCATGTATGGAGATGCGCATGCAAGGCACGTGAGCTCAAGAGCGAGCAATTGACTGCTTTGTGTTTCTGTGCGGACGCACGTCGTCGCATGGATCCACCATTACCACCAAGGTACTTTGGCAATGCAATTGTGGACGTGGTTGCAACAAGCCAAGCCAAGGATCTCATGTCACAACCTCTAAGCCATGCATGCAAAAGAATAAGACAAGTGACAAACAAAGTGACAAATGACTACATTTGTTCTACGATTGAGTTCCTTAAATCTCAAAAAAGTTTGGCTAAGTACCAAGATCGTGGTGCCCTAGGTAACTCAAAAGAAGGTGTTTTCTATGGGAACCCTAATCTTGGTGTTGCAAGTTGGTTGAATCTTCCAATCCGAGGTTTAGACTTTGGTTGGGGAAATGAGATTTTTATGGGACCAGCAACTCATGACTTTGATGGTGATCTTATGATCTTGCCTGGTTATAACAATGATGGATCGATAGTGGTCACTATAGGTTTGCAAGTGACACATATGGAGAAATTTAAGATGTACTTTTATGAGGATATTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_222628.p1 GENE.R_Transcript_222628~~R_Transcript_222628.p1 ORF type:complete len:469 (+),score=53.39,Transferase|PF02458.11|3e-94 R_Transcript_222628:25-1407(+)
MGLRIKGRHIVKPTEPTWNGILPLSELDQIGVITHTSIVYIYNKPTQDSILSSYDKIFTTLIRSLGQALVQFYPLAGRIHWLAGGRFELECNAMGVALVEAEIDQQAHNHIMGGDFTCLVPNIDYGKLPMEEIPLLLVQVSRFKCGGIGLGTSISHAITDGLGAFHFHQKWAELAHYDQHLDQVVLPYLDRSVLQARKKGKYDIFPFAQHEVDSFSRLPTLIGKEDNFEERRKETIATTLVLTKSQMEKPKKMANKERVIINHEIERNYGRFEVVAAHVWRCACKARELKSEQLTALCFCADARRRMDPPLPPRYFGNAIVDVVATSQAKDLMSQPLSHACKRIRQVTNKVTNDYICSTIEFLKSQKSLAKYQDRGALGNSKEGVFYGNPNLGVASWLNLPIRGLDFGWGNEIFMGPATHDFDGDLMILPGYNNDGSIVVTIGLQVTHMEKFKMYFYEDI*

Click here to download the sequence:
Link to NCBI Protein BLAST