Transcript Information: R_Transcript_22339.p1


Annotated TAIR IDAT5G09880.1
Annotated Gene NameSplicing factor, CC1-like
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:3081646-3085179 | Reverse length=527
E-Value7E-28
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.9897961981907
Replicate 26.2421433670075
Replicate 38.2804760905011
Condition 2: 8 Hour
Replicate 16.6178013370933
Replicate 28.0831566115097
Replicate 311.5287256643
Condition 3: 24 Hour
Replicate 112.254505209383
Replicate 26.7805018886572
Replicate 310.943852343449


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_22339.p1 GENE.R_Transcript_22339~~R_Transcript_22339.p1 ORF type:3prime_partial len:296 (+),score=69.56,RRM_1|PF00076.18|1.5e-09,RRM_6|PF14259.2|8.5e-06 R_Transcript_22339:107-991(+)
ATGGATTTTGATGAGTATGAATACTTGGAAAAGACTGTTGAAAATCCCGAGCCCCAGAAATCGAAGGAAGATGCCAATGGTGGGGACGCACCTCTCAAGTCAGGGGAAAAGTATAGAAGCCGAAGTTCTCGGCATAGGGGTGAGGATGATGATGTCGATCGAAAACCCAAGCGTTCCAGATCTGGGGATGATCTGCTTGATCATGATCGACATAGAGATAAGGGTTCTTCTCGGCACCGATCACGGTCCAGAGAAGGAGAAAGGAGTGATAGAGATGGGGAAAGGCATAAAAGTAGCAGAGAAAGAGAACATAGAGATAAGTATAGAGAAAGAGAGGAGAGGAATGGGAGGGACCGTGATCGGGAACGGGAACGGGAACGTGATCGTGAAAGGAAAGAACGTGACCATGAGAAGGAAGTCGAGAGAGACAGGGATGAACGTGAACACCGTAGCAGGAGTCGTTCAGATAGACATCGGGATGATAGGGAGAGGAGGCGAGACAGGGAAGTTAGGGGAAAGAGCAGAGACAGGGAAGTAAGGGAGATGAGCCGGGAAAGGGAATACAGAGAAAGGAGTCGGGATAGGGAGCGCAGAGAAAGGAGTCGAGACATCGAGCTACGTGACAAAGAAAGCCGACGGCATAAGGAAAAGAAGGAAGAAGCAGCAGAGCCAGAGGCTGATCCTGAACGGGATCAAAGGACAGTTTTTGCTTATCAGCTCCCTCTGAGGGCAGATGAAAGAGATATTTTCGAATTTTTCTCTAGAGCAGGCAAGGTGCGGGATGTACGGCTCATAATGGATAGGAATTCAAGACGATCCAAGGGAGTCGGGTATATTGAGTTTTATGACGTAATGTCAGTTCCAATGGCTATAGCACTCTCAGGG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_22339.p1 GENE.R_Transcript_22339~~R_Transcript_22339.p1 ORF type:3prime_partial len:296 (+),score=69.56,RRM_1|PF00076.18|1.5e-09,RRM_6|PF14259.2|8.5e-06 R_Transcript_22339:107-991(+)
MDFDEYEYLEKTVENPEPQKSKEDANGGDAPLKSGEKYRSRSSRHRGEDDDVDRKPKRSRSGDDLLDHDRHRDKGSSRHRSRSREGERSDRDGERHKSSREREHRDKYREREERNGRDRDRERERERDRERKERDHEKEVERDRDEREHRSRSRSDRHRDDRERRRDREVRGKSRDREVREMSREREYRERSRDRERRERSRDIELRDKESRRHKEKKEEAAEPEADPERDQRTVFAYQLPLRADERDIFEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSG

Click here to download the sequence:
Link to NCBI Protein BLAST