Transcript Information: R_Transcript_22341.p1


Annotated TAIR IDAT2G16940.2
Annotated Gene NameSplicing factor, CC1-like
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:7342869-7347052 | Reverse length=610
E-Value4.3E-157
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 150.50677264175
Replicate 240.620683475849
Replicate 345.032563683345
Condition 2: 8 Hour
Replicate 138.746098794362
Replicate 241.609027289706
Replicate 344.192983811567
Condition 3: 24 Hour
Replicate 145.915614455408
Replicate 235.777138711704
Replicate 348.438982815605


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_22341.p1 GENE.R_Transcript_22341~~R_Transcript_22341.p1 ORF type:complete len:352 (+),score=98.87,RRM_1|PF00076.18|0.045,RRM_1|PF00076.18|1e-19,RRM_1|PF00076.18|5.5e-05,RBM39linker|PF15519.2|3.7e-22,RRM_5|PF13893.2|28,RRM_5|PF13893.2|1.3e-06,RRM_5|PF13893.2|8.3e-07,RRM_6|PF14259.2|2.3e+03,RRM_6|PF14259.2|7.6e-13,RRM_6|PF14259.2|0.16 R_Transcript_22341:2016-3071(+)
ATGGATAGGAATTCAAGACGATCCAAGGGAGTCGGGTATATTGAGTTTTATGACGTAATGTCAGTTCCAATGGCTATAGCACTCTCAGGGCAGCCTATTCGTGGTCAACCAGTCATGATTAAACCCTCTGAAGCAGAGAAAAATCTGGTCCAGTCCACATCTACCACAGCTGCAGGAGCTGGTGGTCTCACAGGTTCAGGGGCAGCAAGGAGACTCTATGTTGGTAATTTAGTTCCTAATATTACCGAAGAGCAACTTCGTGTGGTCTTTGAACCATTTGGGACTATAGAGCTGGTGCAGTTACCTCGTGATGAGACAGGCCTTTGTAAAGGATTTGCATTTGTCCAGTTTGCACGTCTTGAAGATGCTAAAGCAGCTCAGAATCTAAATGGACAATTGGATATTGGTGGTCGGTTTATTAAGGTATCAGCTGTCACTGATCAACCTGGGATGCAAGATGCTGGGGCAGCTACTGGTGATTTAGATGATGATGAAGGTGGCGGTTTGTCTTTGAATGCAAGTTCTCGTGCTCTTCTTATGCAAAAGTTGGATCGCAGCGCCGCTTCTTCAAGCATTCCTGGTACAACTGCCTCACCTGCTGTGAATAACAGCGCTATTTCTGCTGCATCTGCACCAATTTTTGGTGCCACTCCTGGAGTTTCTCCTCTTGTGCAGCCTCCTGTTTCCCCTCTTGGAGGATTGCCTGGTGCTGGCCTCGCTGTTCCATCTGTTAATGTTCCAACAGCTGACTCAATTGGAGTCCCAAGTGAATGTCTATTATTGAAGAATATGTTTGATCCTAAATTGGAGACTGAACCGGATTTTGATCTGGACATTAAAGAAGATGTTCAGGATGAATGTGAGAAGTTCGGACCACTGAAGCACATTTTTGTGGACAAGAATAGTGATGGGTTTGTATACCTGAAATTTGATAACACACAAGCTGCAATGAATGCACAACATGCACTTCATGGGAGATGGTTTGCAGGAAAGTTGATTAGTGCCTTATTCATGCTGCCACAGAATTATGAGGCTAAATTTCCAGAGAGCAGATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_22341.p1 GENE.R_Transcript_22341~~R_Transcript_22341.p1 ORF type:complete len:352 (+),score=98.87,RRM_1|PF00076.18|0.045,RRM_1|PF00076.18|1e-19,RRM_1|PF00076.18|5.5e-05,RBM39linker|PF15519.2|3.7e-22,RRM_5|PF13893.2|28,RRM_5|PF13893.2|1.3e-06,RRM_5|PF13893.2|8.3e-07,RRM_6|PF14259.2|2.3e+03,RRM_6|PF14259.2|7.6e-13,RRM_6|PF14259.2|0.16 R_Transcript_22341:2016-3071(+)
MDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPIRGQPVMIKPSEAEKNLVQSTSTTAAGAGGLTGSGAARRLYVGNLVPNITEEQLRVVFEPFGTIELVQLPRDETGLCKGFAFVQFARLEDAKAAQNLNGQLDIGGRFIKVSAVTDQPGMQDAGAATGDLDDDEGGGLSLNASSRALLMQKLDRSAASSSIPGTTASPAVNNSAISAASAPIFGATPGVSPLVQPPVSPLGGLPGAGLAVPSVNVPTADSIGVPSECLLLKNMFDPKLETEPDFDLDIKEDVQDECEKFGPLKHIFVDKNSDGFVYLKFDNTQAAMNAQHALHGRWFAGKLISALFMLPQNYEAKFPESR*

Click here to download the sequence:
Link to NCBI Protein BLAST