Transcript Information: R_Transcript_22368.p1


Annotated TAIR IDAT4G19490.1
Annotated Gene NameVPS54
Annotated Gene Symbol(s)ATVPS54, VPS54
Annotation TypeHomolog
Chromosome Positionchr4:10616017-10622934 | Forward length=1034
E-Value6E-122
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.127126369715
Replicate 22.4471212606408
Replicate 32.5095959604176
Condition 2: 8 Hour
Replicate 12.3972175472828
Replicate 22.1370539754979
Replicate 32.9618012667298
Condition 3: 24 Hour
Replicate 14.227661470836
Replicate 22.7247755738942
Replicate 33.8265217984086


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_22368.p1 GENE.R_Transcript_22368~~R_Transcript_22368.p1 ORF type:5prime_partial len:429 (+),score=103.00,Vps54|PF07928.8|1.1e+04,Vps54|PF07928.8|7.5e-19 R_Transcript_22368:1-1287(+)
CTGGAGTCGGATTTCTCGACAGGAGAGAGGACCAGTGATGCAGATGGTGGAGGCTTGTCTCTTGCAAGCAGGCTGAGGAATTTACCATCTGAAAGCTTCGTTCAATTATTAGCTGCTATTTTCAAGATTGTCCTGGCTCATTTAGTTCGGGCAGCTGAAATCAAAAAGTCCATTGAGTGGATCATGTCTAATCTGGATGGTCATTATGCAGCTGAGTCAGTGGCTGCTGCCATTGCACTTGGTGCTGCCGCTGCAGAAACTGTTCAAGATAGTGATAGTCAAGGCAACTATGTGGTTGCACATTCTCCACAAAGGATTATTGCCAAATCTCCTTCTTTCCAAGGGAAGGCAAATGAAGCAACAAGTCCTTCAAATATGTCAAAAAATTTCCGCGCTGATGTGTTACGAGAAAACGCTGAAGCTGTCTTTGCAGCTTGTGATGCTGCCCATGGGAGGTGGGCAAAACTTCTTAGTGTTCGTGCTCTTCTTCATCCCAAGTTAAGGTTACAGGAGTTTCTAAGCATTTACAGCATCAGTCAAGATTTTATAAATGTTACTCAAAAGACTGGTGGAAGGTTGGGATTTAGTATACGGGGTACACTGCAGTCACAAGCCAAAGCCTTTGTGGATTACCAGCATGAGTCGCGTGTGACAAAAATTAAGGCAGTGTTAGATCAAGAAACCTGGTCAGAAGTTGATGTTCCGGATGAGTTTCAGGCCATTGTTGCTTCAATGCTTACTTCTGATCCTCTGGTTGCTGGGAACTCTGAGGTTTCTCAGGGTACTGAAGTAATATCAAGCAATGGAGAGGCCGCTGTGGCTGACATCAAAGAAGAGAATCCTGAGCATTCTGCAGGACAAACTGATTCCAGCAACAGTTTTAATGATACTGCCACCCAAGAGATATCTCAACATTCGGGTCAGGCAACTAACATTAATAAAGTTGATGTTGCTACTTCAACCAACAGCAAAAACAGCAGCATAAAAGATCGGGGAAAGACAGCTTCTCAAACTCTCATGCATAGAGGGGTTAACTATCACATGGTTAACTGTGGCTTAATATTGCTGAAGATGCTTTCAGAGTACATTGATATGAACGATAGCTTGCCAGCACTTTCATCAGAAGTTGTTCACCGTGTCGTAGAAATTTTGAAGTTCTTCAATACAAGAACTTGTCAGCTGGTTCTTGGGGCCGGGGCCATGCAGGTGTTGACCCCTTTTGTTTGGTTGGAGTACCCTTCTGGATGGTTGATAGTTTTTTCCTTATTCTTTATTTGCTGTACTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_22368.p1 GENE.R_Transcript_22368~~R_Transcript_22368.p1 ORF type:5prime_partial len:429 (+),score=103.00,Vps54|PF07928.8|1.1e+04,Vps54|PF07928.8|7.5e-19 R_Transcript_22368:1-1287(+)
LESDFSTGERTSDADGGGLSLASRLRNLPSESFVQLLAAIFKIVLAHLVRAAEIKKSIEWIMSNLDGHYAAESVAAAIALGAAAAETVQDSDSQGNYVVAHSPQRIIAKSPSFQGKANEATSPSNMSKNFRADVLRENAEAVFAACDAAHGRWAKLLSVRALLHPKLRLQEFLSIYSISQDFINVTQKTGGRLGFSIRGTLQSQAKAFVDYQHESRVTKIKAVLDQETWSEVDVPDEFQAIVASMLTSDPLVAGNSEVSQGTEVISSNGEAAVADIKEENPEHSAGQTDSSNSFNDTATQEISQHSGQATNINKVDVATSTNSKNSSIKDRGKTASQTLMHRGVNYHMVNCGLILLKMLSEYIDMNDSLPALSSEVVHRVVEILKFFNTRTCQLVLGAGAMQVLTPFVWLEYPSGWLIVFSLFFICCT*

Click here to download the sequence:
Link to NCBI Protein BLAST