Transcript Information: R_Transcript_223681.p1


Annotated TAIR IDAT5G09950.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:3102877-3105864 | Reverse length=995
E-Value4.9E-292
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.46888340067167
Replicate 20.15410128745907
Replicate 30.42030711185601
Condition 2: 8 Hour
Replicate 10.53913831076503
Replicate 20.28720398695101
Replicate 30.89925410412926
Condition 3: 24 Hour
Replicate 10.71611508783664
Replicate 20.89030402861046
Replicate 30.84337944665109


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_223681.p1 GENE.R_Transcript_223681~~R_Transcript_223681.p1 ORF type:complete len:545 (+),score=111.45,PPR_2|PF13041.2|0.36,PPR_2|PF13041.2|0.0038,PPR_2|PF13041.2|0.21,PPR_2|PF13041.2|1.2e-06,PPR_2|PF13041.2|0.82,PPR_2|PF13041.2|4e-11,PPR_2|PF13041.2|0.44,PPR_2|PF13041.2|22,PPR_2|PF13041.2|1.5e+03,PPR|PF01535.16|0.091,PPR|PF01535.16|48,PPR|PF01535.16|0.00058,PPR|PF01535.16|3.8e-05,PPR|PF01535.16|0.0068,PPR|PF01535.16|4.7e-06,PPR|PF01535.16|0.19,PPR|PF01535.16|0.017,PPR|PF01535.16|3.5e+03,DYW_deaminase|PF14432.2|1.3e-35,PPR_3|PF13812.2|4.3,PPR_3|PF13812.2|6.1e+02,PPR_3|PF13812.2|2.2,PPR_3|PF13812.2|11,PPR_3|PF13812.2|4.3e+02,PPR_3|PF13812.2|18,PPR_3|PF13812.2|0.026,PPR_3|PF13812.2|4.2,PPR_3|PF13812.2|2.6,PPR_1|PF12854.3|4.6e+03,PPR_1|PF12854.3|2.4e+02,PPR_1|PF12854.3|5.2e+02,PPR_1|PF12854.3|0.75,PPR_1|PF12854.3|0.0042,PPR_1|PF12854.3|0.0014,PPR_1|PF12854.3|14,PPR_1|PF12854.3|0.51,PPR_1|PF12854.3|1.3e+03 R_Transcript_223681:1176-2810(+)
ATGAGGGAGGGGGCTCAAATACATGCAGAAGCACTTAAATTGGGACATGATTCCGATGTCTCGGTTTCAAATGCTCTTCTTGCATTATATGCTGAGACTGGGAATATATCAGAATGCCAGAAACTGTTTTCTTTGATGCCAGAGCATGATCAAGTTTCATGGAATTCTATTATTGGGGCACTGGCTGACTCAGAAGTATATGCTTCAGAAGCTGTGATGTGTTTTCTGGAAATGATGCGGTCAAATTGGAGGCTTAGTGGGGTCACTTTTGTAAATATTCTTTCAGCTGTGTCATCTCTTTCACTCTCTGAATTAGGTCCTCAGCTTCATGCCTTAGCATTCAAATACAGTGTCACAAACGACCCTACAGTTGAGAATGCACTTATATCTTGCTATGGGAAGTGCGACAAGATTGAAGATTGTGAATTGATTTTTTCAAGAATGTCTGAGAGGAGGGATGAGATCAGTTGGAACTCAATGATATCTGGTTATATACATAATGAGCAATTGTCCAAAGCCATGGATCTTGTCTGGTTCATGATGCAGAATGGCCGTAGGTTAGACCACTTCATCTTTGCCACTGTTCTTAGCGCTTGCGCCTCAGTTGCTACCTTGGAGCGTGGAATGGAAGTTCATGCTTGTGAAATCAGGGCTGGTCTGGAATCTGATGTTGTGGTGGGGAGTGCAATCGTTGACATGTATGCAAAGTGTGGACGGATAGACTATGCTATGAAATTCTTTGAGCTGATGCCAGTTAAAAATGTGTATTCTTGGAATTCCATGATTTCAGGTTATGCACGACATGGGAATGCTCAGAAAGCTTTAGAAACTTCTGTGAAAATGAAGAAAGCAGGAATGCCCCCGAATCATGTTACATTTGTCGGAGTTTTATCTGCTTGTAGTCATGGTGGTATGGTGCAAGAAGGATTTAAGCATTTTGAATCTATGAGCAAAGAGCATGGATTGGCTCCTCAAATGGAGCATTTTTCGTGTATGGTGGACCTTCTCGGACGCTCTGGTCGGCTAGATAAGGTTGAAGATTTCATTAATAAAATGCCTATGAAGCCAAATGTCCTTATTTGGAGAACAGTTCTGGGGTCTTGCTGTCTTACAAATGGGCGCAACAGTGAGTTAGGTAAGCGGGCTGCTGAGATGCTTTTGCAGTTGGAACCAGACAATGCAGTCAATTATGTGCTTCTTTCTAACATGTATGCTGCTGGAGCAAATTGGGATAACATGGCGAAGGCTCGGTCTTCATTGAAGCTGGCAGCAGCGAAGAAGGAAGCAGGATGCAGTTGGGTCACTATGAAAGATGGGGTTCATGTATTTGTTGCTGGAGACAAATCACACCCCGAGAAAGAAGCAATCTATAGTAAACTTAGAGAACTCCAAATAAAGATGAGGGATGCTGGTTATGTGCCACAAACAAGCTTTGCTCTGTACGATCTAGATCTAGAGAGCAAGGAAGAACACCTGAGTTACCACAGTGAGAGACTGGCTGCTGCTTTTGTTCTTACACGCAAATCAGTATCCACTATCAGGATAATGAAAAATCTGCGTGTATGTGGTGACTGTCACTCTGCTTTCAAATATATATCGAAGATTGTTGATCGTCAAATTGTGTTACGAGACTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_223681.p1 GENE.R_Transcript_223681~~R_Transcript_223681.p1 ORF type:complete len:545 (+),score=111.45,PPR_2|PF13041.2|0.36,PPR_2|PF13041.2|0.0038,PPR_2|PF13041.2|0.21,PPR_2|PF13041.2|1.2e-06,PPR_2|PF13041.2|0.82,PPR_2|PF13041.2|4e-11,PPR_2|PF13041.2|0.44,PPR_2|PF13041.2|22,PPR_2|PF13041.2|1.5e+03,PPR|PF01535.16|0.091,PPR|PF01535.16|48,PPR|PF01535.16|0.00058,PPR|PF01535.16|3.8e-05,PPR|PF01535.16|0.0068,PPR|PF01535.16|4.7e-06,PPR|PF01535.16|0.19,PPR|PF01535.16|0.017,PPR|PF01535.16|3.5e+03,DYW_deaminase|PF14432.2|1.3e-35,PPR_3|PF13812.2|4.3,PPR_3|PF13812.2|6.1e+02,PPR_3|PF13812.2|2.2,PPR_3|PF13812.2|11,PPR_3|PF13812.2|4.3e+02,PPR_3|PF13812.2|18,PPR_3|PF13812.2|0.026,PPR_3|PF13812.2|4.2,PPR_3|PF13812.2|2.6,PPR_1|PF12854.3|4.6e+03,PPR_1|PF12854.3|2.4e+02,PPR_1|PF12854.3|5.2e+02,PPR_1|PF12854.3|0.75,PPR_1|PF12854.3|0.0042,PPR_1|PF12854.3|0.0014,PPR_1|PF12854.3|14,PPR_1|PF12854.3|0.51,PPR_1|PF12854.3|1.3e+03 R_Transcript_223681:1176-2810(+)
MREGAQIHAEALKLGHDSDVSVSNALLALYAETGNISECQKLFSLMPEHDQVSWNSIIGALADSEVYASEAVMCFLEMMRSNWRLSGVTFVNILSAVSSLSLSELGPQLHALAFKYSVTNDPTVENALISCYGKCDKIEDCELIFSRMSERRDEISWNSMISGYIHNEQLSKAMDLVWFMMQNGRRLDHFIFATVLSACASVATLERGMEVHACEIRAGLESDVVVGSAIVDMYAKCGRIDYAMKFFELMPVKNVYSWNSMISGYARHGNAQKALETSVKMKKAGMPPNHVTFVGVLSACSHGGMVQEGFKHFESMSKEHGLAPQMEHFSCMVDLLGRSGRLDKVEDFINKMPMKPNVLIWRTVLGSCCLTNGRNSELGKRAAEMLLQLEPDNAVNYVLLSNMYAAGANWDNMAKARSSLKLAAAKKEAGCSWVTMKDGVHVFVAGDKSHPEKEAIYSKLRELQIKMRDAGYVPQTSFALYDLDLESKEEHLSYHSERLAAAFVLTRKSVSTIRIMKNLRVCGDCHSAFKYISKIVDRQIVLRD*

Click here to download the sequence:
Link to NCBI Protein BLAST