Transcript Information: R_Transcript_22369.p1


Annotated TAIR IDAT4G19490.1
Annotated Gene NameVPS54
Annotated Gene Symbol(s)ATVPS54, VPS54
Annotation TypeOrtholog
Chromosome Positionchr4:10616017-10622934 | Forward length=1034
E-Value4.6E-251
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 113.704780914847
Replicate 29.1815505120775
Replicate 311.339969107006
Condition 2: 8 Hour
Replicate 19.212503643518
Replicate 29.2616853830653
Replicate 312.310745816797
Condition 3: 24 Hour
Replicate 113.070038768247
Replicate 211.282393161846
Replicate 311.702337159331


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_22369.p1 GENE.R_Transcript_22369~~R_Transcript_22369.p1 ORF type:5prime_partial len:606 (+),score=140.66,Vps54|PF07928.8|7e-47,Vps54|PF07928.8|2.8e+03 R_Transcript_22369:1-1818(+)
CTGGAGTCGGATTTCTCGACAGGAGAGAGGACCAGTGATGCAGATGGTGGAGGCTTGTCTCTTGCAAGCAGGCTGAGGAATTTACCATCTGAAAGCTTCGTTCAATTATTAGCTGCTATTTTCAAGATTGTCCTGGCTCATTTAGTTCGGGCAGCTGAAATCAAAAAGTCCATTGAGTGGATCATGTCTAATCTGGATGGTCATTATGCAGCTGAGTCAGTGGCTGCTGCCATTGCACTTGGTGCTGCCGCTGCAGAAACTGTTCAAGATAGTGATAGTCAAGGCAACTATGTGGTTGCACATTCTCCACAAAGGATTATTGCCAAATCTCCTTCTTTCCAAGGGAAGGCAAATGAAGCAACAAGTCCTTCAAATATGTCAAAAAATTTCCGCGCTGATGTGTTACGAGAAAACGCTGAAGCTGTCTTTGCAGCTTGTGATGCTGCCCATGGGAGGTGGGCAAAACTTCTTAGTGTTCGTGCTCTTCTTCATCCCAAGTTAAGGTTACAGGAGTTTCTAAGCATTTACAGCATCAGTCAAGATTTTATAAATGTTACTCAAAAGACTGGTGGAAGGTTGGGATTTAGTATACGGGGTACACTGCAGTCACAAGCCAAAGCCTTTGTGGATTACCAGCATGAGTCGCGTGTGACAAAAATTAAGGCAGTGTTAGATCAAGAAACCTGGTCAGAAGTTGATGTTCCGGATGAGTTTCAGGCCATTGTTGCTTCAATGCTTACTTCTGATCCTCTGGTTGCTGGGAACTCTGAGGTTTCTCAGGGTGGTGAAGTAATATCAAGAAATGGAGAGGCCGCTGTGGCGGATATCAAAGAAGCGAATTGTGAGCATTCTGCAGGGCAAACTGATTCCAGCAACAGTTCTAATGATACTGCCAACCAAGAGATATCTCAACATTCAGGTCAGGCAACTAACATTAATAAAGTTGATGTTGCTACTTCAACCAACAGCAAAAACAGCAGCATAAAAGATCGGGGAAAGACAGCTTCTCAAACTCTCATGCATAGAGGGGTTAACTATCACATGGTTAACTGTGGCTTAATATTGCTGAAGATGCTTTCAGAGTACATTGATATGAACGATAGCTTGCCAGCACTTTCATCAGAAGTTGTTCACCGTGTCGTAGAAATTTTGAAGTTCTTCAATACAAGAACTTGTCAGCTGGTACTTGGTGCTGGTGCCATGCAGGTGTCTGGCTTGAAATCCATCACATCTAAGCATTTGGCATTGGCGAGTCAAGTTATCAGTTTTGTATATGCTATTATTCCTGACATCCGAAGGATCCTCTTTCTCAAAGTACCCGACGCTAGAAGAGCATTGTTACAATCAGAGATTGATCGGGTTGCACAGGATTATAAGGTTCACCGAGATGAGATACATACAAAGCTGGTTCAGATTATGAAAGAGAGGTTAATGGTACATCTGCGAGGACTGCCTCAAATTGTTGAGAGTTGGAGCAAACCTGATGATGGTGACACACAAGCAAGTCAGTTTGCAAGGTCACTGACGAAGGAAGTTGGCTATCTCCAACGTGTCTTATCAAGGTTGCTCCTTGAGGCAGATGTTCAATGGATTTTCAGGCAAGTGGTCATAGTTTTCCATACACAAATTTCAGAAGCTTTTTCTAGCTTGGAGATTAACACTGCACAAGCAAAAACGAGGCTTCATCGAGATGTGCAACATATTCTTGCATGCATTCATTCACTTCCTACTGATATTGCTAGTAAGAACGGTGTTGCAAACTGGGGGCACCTTGATGAATTCTCGGCTCAAAGATTTGGCAGTGAAGCAGATCCATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_22369.p1 GENE.R_Transcript_22369~~R_Transcript_22369.p1 ORF type:5prime_partial len:606 (+),score=140.66,Vps54|PF07928.8|7e-47,Vps54|PF07928.8|2.8e+03 R_Transcript_22369:1-1818(+)
LESDFSTGERTSDADGGGLSLASRLRNLPSESFVQLLAAIFKIVLAHLVRAAEIKKSIEWIMSNLDGHYAAESVAAAIALGAAAAETVQDSDSQGNYVVAHSPQRIIAKSPSFQGKANEATSPSNMSKNFRADVLRENAEAVFAACDAAHGRWAKLLSVRALLHPKLRLQEFLSIYSISQDFINVTQKTGGRLGFSIRGTLQSQAKAFVDYQHESRVTKIKAVLDQETWSEVDVPDEFQAIVASMLTSDPLVAGNSEVSQGGEVISRNGEAAVADIKEANCEHSAGQTDSSNSSNDTANQEISQHSGQATNINKVDVATSTNSKNSSIKDRGKTASQTLMHRGVNYHMVNCGLILLKMLSEYIDMNDSLPALSSEVVHRVVEILKFFNTRTCQLVLGAGAMQVSGLKSITSKHLALASQVISFVYAIIPDIRRILFLKVPDARRALLQSEIDRVAQDYKVHRDEIHTKLVQIMKERLMVHLRGLPQIVESWSKPDDGDTQASQFARSLTKEVGYLQRVLSRLLLEADVQWIFRQVVIVFHTQISEAFSSLEINTAQAKTRLHRDVQHILACIHSLPTDIASKNGVANWGHLDEFSAQRFGSEADP*

Click here to download the sequence:
Link to NCBI Protein BLAST