Transcript Information: R_Transcript_223892.p1


Annotated TAIR IDAT4G02750.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:1221116-1223461 | Reverse length=781
E-Value8E-85
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.44771413662518
Replicate 20.079231322325653
Replicate 30.30254181730767
Condition 2: 8 Hour
Replicate 10.13859923555045
Replicate 20.50628411715892
Replicate 30.44522818502836
Condition 3: 24 Hour
Replicate 10.47648279151839
Replicate 20.2912958721397
Replicate 30.78465356424726


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_223892.p1 GENE.R_Transcript_223892~~R_Transcript_223892.p1 ORF type:5prime_partial len:530 (+),score=45.91,PPR|PF01535.16|0.0034,PPR|PF01535.16|5.5e-06,PPR|PF01535.16|0.00099,PPR|PF01535.16|0.01,PPR|PF01535.16|0.00011,PPR|PF01535.16|0.00018,PPR|PF01535.16|6.9e-05,PPR|PF01535.16|6.4e-08,PPR|PF01535.16|1.5,PPR|PF01535.16|69,PPR|PF01535.16|0.0072,PPR|PF01535.16|0.0092,PPR|PF01535.16|8.4,PPR|PF01535.16|2.6e+03,PPR_2|PF13041.2|0.0038,PPR_2|PF13041.2|3.2e-07,PPR_2|PF13041.2|0.00067,PPR_2|PF13041.2|0.32,PPR_2|PF13041.2|0.00031,PPR_2|PF13041.2|0.068,PPR_2|PF13041.2|0.00012,PPR_2|PF13041.2|2.2e-07,PPR_2|PF13041.2|0.51,PPR_2|PF13041.2|0.00014,PPR_2|PF13041.2|1.5,PPR_2|PF13041.2|5.1e-09,PPR_1|PF12854.3|0.077,PPR_1|PF12854.3|1.1e-07,PPR_1|PF12854.3|0.063,PPR_1|PF12854.3|5.2,PPR_1|PF12854.3|0.16,PPR_1|PF12854.3|0.034,PPR_1|PF12854.3|0.00063,PPR_1|PF12854.3|0.0046,PPR_1|PF12854.3|69,PPR_1|PF12854.3|22,PPR_1|PF12854.3|98,PPR_1|PF12854.3|0.084,PPR_1|PF12854.3|9,PPR_1|PF12854.3|53,PPR_1|PF12854.3|3.3e+03,PPR_3|PF13812.2|3.1,PPR_3|PF13812.2|0.00094,PPR_3|PF13812.2|45,PPR_3|PF13812.2|3.7e+02,PPR_3|PF13812.2|3.3,PPR_3|PF13812.2|0.19,PPR_3|PF13812.2|11,PPR_3|PF13812.2|0.12,PPR_3|PF13812.2|4.3e+02,PPR_3|PF13812.2|9.8e+03,PPR_3|PF13812.2|8.6e+03,PPR_3|PF13812.2|8.7,PPR_3|PF13812.2|0.074,PPR_3|PF13812.2|88,TPR_19|PF14559.2|7.2e+03,TPR_19|PF14559.2|1.9e+02,TPR_19|PF14559.2|0.25,TPR_19|PF14559.2|2.5e+02,TPR_19|PF14559.2|2.2e+03,TPR_19|PF14559.2|3.7e+03,TPR_19|PF14559.2|3.9e+02 R_Transcript_223892:3-1592(+)
GAAATTGGAGCCAGTATGAAGCATATTTTCACTAGCTATGGATGCAATTTGCGCAATTGCATGTTTGTCATTACAAGAAACCGTTTTTGTCGCAGTTTCAATGGCGGGAAGCTATCAGAAAATCATGACACATTCTCATGGAACACGAAAATCATGTCTTACTTCAAGAACCGCGACACTGTCTCTGCACGCCAAATGTTCGACGAAATGCCGCAGAGAAATGTGGTGACTTGGAATTGTATGATTTCCGGGTTTGCTAGGAATCACATGATTCATCAAGCCCGTCAAATGTTTGATGCTATGCCCACCAAAAATGTCGTTTCTTGGACTGCCATGTTAAGTGGGTACATTGGGTGTGGTAACTTGGGAGAAGCGCGGAATTTGTTTGATCAAATACCCCATGAAATGAGAACCCATGTTTGTTGTGATATTATGTTGAGTGGGTACATAAAATTTGGAATGATGGTTGAAGCTAGAGAGTTGTTTCGAAATGTTGGTCTTTTTAATAGGATGTTGAGTGGTTATGTACAAATGGGATATGTTAATGAAGCAGAACAGCTGTTCTTGAGCATGCCTGAGCATGATGTGACATCATGGACTAATATGATAACTTGCTATGCAAGAGCTGGTTTAATGAACAAAGCAAAGGCCATATTTGACAATATTCCGATCGATCAAAAGGATGCAATGGCTTGGACTCTAATGATCAGGGGTTATATGCAAAATGGCATTGTAAATGAGGCTTTGAAATTATTCAATGTGATGCCAATTCGGGATATTGTCGCTTGGAATTGCGTTATAGGTGGGTTTGTTCAGAATGGTAGATTAAGGGAGGCCTTAGACATGTACAAAAGAATGCCAAGGAGGAACATTGTTTCATCAAATTCGATACTTTATGGGTTTGTGAGAGAGGGAGATATGGTCAGTGCCCGAAACTTCTTTGAAAATGTTATGACCCGTAAAGATATAACGTCATGGAATACACTGATTTGTGGGTATCAAACAGAGGAAACTTTGTTCTTATTTTCCCAGATGTTAAAACATGAATTTAAGCCTGACCAAACAACTTACTCAACAATTTCATCTGTCTGTGGTTCGCTTGCGCTGCGTGGTTGGGGCAAAGCCATCCATCTACGAACAATCAAGACAGGTTACAATTATGTCATGATGGTTTCAAGTTCGCTTATATCAATGTATTTTAAATGTGGATTGATAGATGATGCTGAAACTTTGTTTGAGTGCACGAAAAAGCGGGATACTATAACTTGGAACACTATCATAGTTGCACAAGCCTATCATGGATCTGCAGGTAAGGCTCTAGAGCTTTACTCTTCCATGATTGAAGCTGGATATGAACCAAATCATATTACATTTCTAGCCCTATTAACAGGTTGTGCTCACTGGGGTCTCGTTGAAGAGGTCAGAAATATTTCAAGTCTATGCAAAAGGACTGGAGTATTACTCCACAGCCTGAGCATTATGCTTGTATGGCTGATTTGTTTGGAAGATCTGGTATGTTATTTGAGGCTTATGAGTTCATTAAACAATTGCCTGCGGATATTCCGTCTTATGCTTGGGAAACCTTGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_223892.p1 GENE.R_Transcript_223892~~R_Transcript_223892.p1 ORF type:5prime_partial len:530 (+),score=45.91,PPR|PF01535.16|0.0034,PPR|PF01535.16|5.5e-06,PPR|PF01535.16|0.00099,PPR|PF01535.16|0.01,PPR|PF01535.16|0.00011,PPR|PF01535.16|0.00018,PPR|PF01535.16|6.9e-05,PPR|PF01535.16|6.4e-08,PPR|PF01535.16|1.5,PPR|PF01535.16|69,PPR|PF01535.16|0.0072,PPR|PF01535.16|0.0092,PPR|PF01535.16|8.4,PPR|PF01535.16|2.6e+03,PPR_2|PF13041.2|0.0038,PPR_2|PF13041.2|3.2e-07,PPR_2|PF13041.2|0.00067,PPR_2|PF13041.2|0.32,PPR_2|PF13041.2|0.00031,PPR_2|PF13041.2|0.068,PPR_2|PF13041.2|0.00012,PPR_2|PF13041.2|2.2e-07,PPR_2|PF13041.2|0.51,PPR_2|PF13041.2|0.00014,PPR_2|PF13041.2|1.5,PPR_2|PF13041.2|5.1e-09,PPR_1|PF12854.3|0.077,PPR_1|PF12854.3|1.1e-07,PPR_1|PF12854.3|0.063,PPR_1|PF12854.3|5.2,PPR_1|PF12854.3|0.16,PPR_1|PF12854.3|0.034,PPR_1|PF12854.3|0.00063,PPR_1|PF12854.3|0.0046,PPR_1|PF12854.3|69,PPR_1|PF12854.3|22,PPR_1|PF12854.3|98,PPR_1|PF12854.3|0.084,PPR_1|PF12854.3|9,PPR_1|PF12854.3|53,PPR_1|PF12854.3|3.3e+03,PPR_3|PF13812.2|3.1,PPR_3|PF13812.2|0.00094,PPR_3|PF13812.2|45,PPR_3|PF13812.2|3.7e+02,PPR_3|PF13812.2|3.3,PPR_3|PF13812.2|0.19,PPR_3|PF13812.2|11,PPR_3|PF13812.2|0.12,PPR_3|PF13812.2|4.3e+02,PPR_3|PF13812.2|9.8e+03,PPR_3|PF13812.2|8.6e+03,PPR_3|PF13812.2|8.7,PPR_3|PF13812.2|0.074,PPR_3|PF13812.2|88,TPR_19|PF14559.2|7.2e+03,TPR_19|PF14559.2|1.9e+02,TPR_19|PF14559.2|0.25,TPR_19|PF14559.2|2.5e+02,TPR_19|PF14559.2|2.2e+03,TPR_19|PF14559.2|3.7e+03,TPR_19|PF14559.2|3.9e+02 R_Transcript_223892:3-1592(+)
EIGASMKHIFTSYGCNLRNCMFVITRNRFCRSFNGGKLSENHDTFSWNTKIMSYFKNRDTVSARQMFDEMPQRNVVTWNCMISGFARNHMIHQARQMFDAMPTKNVVSWTAMLSGYIGCGNLGEARNLFDQIPHEMRTHVCCDIMLSGYIKFGMMVEARELFRNVGLFNRMLSGYVQMGYVNEAEQLFLSMPEHDVTSWTNMITCYARAGLMNKAKAIFDNIPIDQKDAMAWTLMIRGYMQNGIVNEALKLFNVMPIRDIVAWNCVIGGFVQNGRLREALDMYKRMPRRNIVSSNSILYGFVREGDMVSARNFFENVMTRKDITSWNTLICGYQTEETLFLFSQMLKHEFKPDQTTYSTISSVCGSLALRGWGKAIHLRTIKTGYNYVMMVSSSLISMYFKCGLIDDAETLFECTKKRDTITWNTIIVAQAYHGSAGKALELYSSMIEAGYEPNHITFLALLTGCAHWGLVEEVRNISSLCKRTGVLLHSLSIMLVWLICLEDLVCYLRLMSSLNNCLRIFRLMLGKPC*

Click here to download the sequence:
Link to NCBI Protein BLAST