Transcript Information: R_Transcript_223962.p2


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value4E-23
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.071161641149001
Replicate 20.2455707651029
Replicate 30.089305019868041
Condition 2: 8 Hour
Replicate 10.095461461782632
Replicate 20.13076539088413
Replicate 30.10614976970987
Condition 3: 24 Hour
Replicate 10.044752060872718
Replicate 20.085985414778079
Replicate 30.042666091007597


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_223962.p2 GENE.R_Transcript_223962~~R_Transcript_223962.p2 ORF type:3prime_partial len:513 (-),score=105.66,UBN2_3|PF14244.2|7.5e-42,Retrotrans_gag|PF03732.13|1.4e-08 R_Transcript_223962:1-1536(-)
ATGGCTGCTACATCTGATTCATCTTCGTCCAATGTTGTCATTGATGTTCATAGTGAGTTGTATATACATCATGGTGATGTTTCGAGTGCTTTCATGCTCGCGACACAAAAGCTTACTGGAGATAATTTTGGTGAATGGAAGAGGTGTGCAGAAATCTCTCTGAGTGCTAAGAACAAATTAGGTCTTGTCCTTGGGACTTGTCCTCAGCCTGCTGCATCTTCACCTTTGCTAAGCCATTGGCAGCATTGTAATAATTTGGTAATTTCGTGGATTTTACATTCAGTTACTCCTGATATTGCTAGAAGTATTTTGTACTATAATACTGCTGCTGAGATATGGAATGAACTTCAAGATCGTTATGGACAATCTAATGCTCCAAGGAAATATCAAGTTCACAAACATATCAGTGAAATCTCTCAAGGCAATTTGTTTGTGACTGAGTATTATACAGCTTTAAAGACTTCTTGGGATGAATATTTGTCTTTGATAACTCTGCCTTCTTGTACCTGTGGAAGTAGCACTGCCTTTTTGGACATATTGCAAGAACAACAAACTTTACAGTTTCTGTTTGGTCTCAATGATGATTTTGTTCATGTTAGAGGCAATGTACTGATGATGAAACCTCTACCTAACTTGAGTCAAGCTTATAGATATGTATATCAAGAAGAAAAGCAAAGAGAATGTGGTGTTTCTGTCAATATTGGTAGTGAATCTACTGCCTTAGCTGCACATAATCGTTCTTCATCATTTCGAGGAAGCAATTTTTCTCCTCAGCCTAATCACAATAATAGATACAATTCTCAATGGAACAAAGGCCATCATTCTGGTCAATATACTTCAGGTAGTTCTGGCGGATTTTCTTCAAATCAAGGTGTTGTATATGGCATTGCACCCAATGGCAGGAAATCAAAGTTTTTCTGTGATCATTGCAAGATTTATGGTCACACCATTGACAGATGCTTTAAGATCCATGGTTTCCCTAAGGATAAGGGCAAAAGAATTGCTAATTTTGCTCAGGCTGATGCCTACAATGCTTCTCCTATCCTTAATAATTCTGATTCCTCTCTGGCTGGCCCTTCCTCTGCACCTGAACAAGTTCAACAGTTGATTTCTCTGGTTCAAAATCAACATCTCGAGGTTCCTCACTCTTCTGGTAATTCCTCAGCTTTCTTTGCAGGTAAAGTTCTTTGTCTACTTTCTTATAGTACTAACTTGAAATGGATCATAGATAGTGGAGCTTCTGATCATATCACACCCCATCTTTCTTTGTTCACCACATATAAACCTGCTCTTCAACCTTGTTTTATCACTATGCCTAATGGTTTACAAGCTCAAGTTCATCATATTGGCACTGTGATTTTGCATTCTGATATTGTTTTGGAAAATGTCATACATGTTCCTGATTTCCAATTCAATTTACTTTCTGTTCTTGGCACTGTGATTTTGCATTCTGATATTGTTTTGGAAAATGTCATACATGTTCCTGATTTCCAATTCAATTTACTTTCTGTTCTTGGCACTGTGATTTTGCATTCT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_223962.p2 GENE.R_Transcript_223962~~R_Transcript_223962.p2 ORF type:3prime_partial len:513 (-),score=105.66,UBN2_3|PF14244.2|7.5e-42,Retrotrans_gag|PF03732.13|1.4e-08 R_Transcript_223962:1-1536(-)
MAATSDSSSSNVVIDVHSELYIHHGDVSSAFMLATQKLTGDNFGEWKRCAEISLSAKNKLGLVLGTCPQPAASSPLLSHWQHCNNLVISWILHSVTPDIARSILYYNTAAEIWNELQDRYGQSNAPRKYQVHKHISEISQGNLFVTEYYTALKTSWDEYLSLITLPSCTCGSSTAFLDILQEQQTLQFLFGLNDDFVHVRGNVLMMKPLPNLSQAYRYVYQEEKQRECGVSVNIGSESTALAAHNRSSSFRGSNFSPQPNHNNRYNSQWNKGHHSGQYTSGSSGGFSSNQGVVYGIAPNGRKSKFFCDHCKIYGHTIDRCFKIHGFPKDKGKRIANFAQADAYNASPILNNSDSSLAGPSSAPEQVQQLISLVQNQHLEVPHSSGNSSAFFAGKVLCLLSYSTNLKWIIDSGASDHITPHLSLFTTYKPALQPCFITMPNGLQAQVHHIGTVILHSDIVLENVIHVPDFQFNLLSVLGTVILHSDIVLENVIHVPDFQFNLLSVLGTVILHS

Click here to download the sequence:
Link to NCBI Protein BLAST