Transcript Information: R_Transcript_223970.p2


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value8E-05
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.26465924894493
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_223970.p2 GENE.R_Transcript_223970~~R_Transcript_223970.p2 ORF type:5prime_partial len:238 (-),score=36.12,rve|PF00665.22|1e-11,gag_pre-integrs|PF13976.2|2.3e-07 R_Transcript_223970:1278-1991(-)
ACAAAACAAATTTCATGTTCTATCTCTTTCTCATCTTCCCTCTGCTTGCTGCAAGCCCCTTCAATGAAGAGGCCCTTGGTTCTTGGTAAGCAGCAGGGGGGCCTCTACCTTCTCCGCATGTCAGAAGCATCAAGTCTTCCTTCTTCTTCATCTGTTTCATCTAGCCTTGTTACTGTCAATTCAGATTGTAAACCTTCTGATTTTACTCATGGTTGTAATTCTTCTGTAAAGAACAATGTATCTGCTGAATGTCTTTTATGGCATTCAAGACTTGGTCATTTACCTTTCAATAAAATGAAACAATTATCTCTTCCATCTATTGATCCTGCTTTGTTTTCTCAGTTTACTTGTGATACATGTCATAAAGCAAGACAACATAAACTTCCCTTTCCTCACAGTTGCATTAAAACATCTCATCCTTTTGAGCTCATACATGTTGACCTATGGGGACCCTACCATCACCAGACTTATGATGGCTACAAATATTTTTTGACCATAGTTGATGATTTTAGTCGATGTACATGGACTCATTTACTCAGTAGCAAAGCCAATGCTTTCACCCTCATCAAATCCTTTGTTCACATGATCAAAACTCAGTTTCATTCTGACCTTCAAATTCTAAGGAGTGACAATGCATTAGAGCTTGGTAAAAGCCATGAAGCAATCAGATTTTTTTCAAGAAAAAGGCATTATCCATCAGACAAGCTGTGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_223970.p2 GENE.R_Transcript_223970~~R_Transcript_223970.p2 ORF type:5prime_partial len:238 (-),score=36.12,rve|PF00665.22|1e-11,gag_pre-integrs|PF13976.2|2.3e-07 R_Transcript_223970:1278-1991(-)
TKQISCSISFSSSLCLLQAPSMKRPLVLGKQQGGLYLLRMSEASSLPSSSSVSSSLVTVNSDCKPSDFTHGCNSSVKNNVSAECLLWHSRLGHLPFNKMKQLSLPSIDPALFSQFTCDTCHKARQHKLPFPHSCIKTSHPFELIHVDLWGPYHHQTYDGYKYFLTIVDDFSRCTWTHLLSSKANAFTLIKSFVHMIKTQFHSDLQILRSDNALELGKSHEAIRFFSRKRHYPSDKLC*

Click here to download the sequence:
Link to NCBI Protein BLAST