Transcript Information: R_Transcript_225540.p1


Annotated TAIR IDAT4G28840.1
Annotated Gene Nameunknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20080.1); Has 71 Blast hits to 69 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:14240867-14242513 | Forward length=193
E-Value9E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.10140533863733
Replicate 20
Replicate 30.12725965331196
Condition 2: 8 Hour
Replicate 10.2720651660805
Replicate 20.12422712133992
Replicate 30.10084228122437
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_225540.p1 GENE.R_Transcript_225540~~R_Transcript_225540.p1 ORF type:3prime_partial len:180 (+),score=52.63 R_Transcript_225540:131-667(+)
ATGGCAAGTGATCATCCAAACAACAACATGGGAAATGAGAGATCTGGTGGTTCTTCAAATTCTTCCTCTTCAAATTCCTCAGGAAAGAAAGTCAAAAACAAAAGTGGTGGTAGTAATTCAGACAAGCCAAAACAACCTCAAAGAGGCCTTGGTGTTGCTCAACTTGAGAAGATTAGACTTCACAGTCATGCTAGTTGCGGTTTTATCCCTTCTCCTCAACACCCCTTTTGTCCCCCCATGCCCTTCCCCAACCCTACTTTTCAGCATATGCAGGAGGAAATGAGGATGCATGCTGGGTATCAGGCTGCATTGCAACAAGCAAATGCTATGTCGTTTGGTTCTTCACCACCACCTCAACCAATGGTGGGTTCATCACCTTCGTACGGATACCATCCTGGAAGTTTCATGATGGGAATTGGAGATCCTATGGAGAGGGCAAGCAACATCAGATATGGTACTGAATCTCAGGCATGCAATACAGCAAGGTGGAACCCTAACAATAATGTCATTCATGTACCGGAGAGCCACCAATATGCA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_225540.p1 GENE.R_Transcript_225540~~R_Transcript_225540.p1 ORF type:3prime_partial len:180 (+),score=52.63 R_Transcript_225540:131-667(+)
MASDHPNNNMGNERSGGSSNSSSSNSSGKKVKNKSGGSNSDKPKQPQRGLGVAQLEKIRLHSHASCGFIPSPQHPFCPPMPFPNPTFQHMQEEMRMHAGYQAALQQANAMSFGSSPPPQPMVGSSPSYGYHPGSFMMGIGDPMERASNIRYGTESQACNTARWNPNNNVIHVPESHQYA

Click here to download the sequence:
Link to NCBI Protein BLAST