Transcript Information: R_Transcript_227632.p1


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value0.0005
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.51855002712269
Replicate 20.35789148436872
Replicate 30.13015191815996
Condition 2: 8 Hour
Replicate 10.1391242326548
Replicate 20.38115139502021
Replicate 30.3094024537566
Condition 3: 24 Hour
Replicate 10
Replicate 20.50125588387676
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_227632.p1 GENE.R_Transcript_227632~~R_Transcript_227632.p1 ORF type:internal len:176 (+),score=25.88,gag_pre-integrs|PF13976.2|7.2e-16,rve|PF00665.22|1.9e-11 R_Transcript_227632:2-526(+)
GCTGAGGCCATTACTGCTGTTGGTGCTAATAAAGCTTCTACTTCTGCTTATATTGTTGAGTCTGTTGATATTTGGCATGCTAGATTAGGACATGTGAATTATGGTTCTTTGAAACGGTTGAGAAAAATGAACCTGCTTCCTAATCTAACTTCGGATAGTAGTAAAAAGTGTGAAATCTGTGTTGAGGCTAAGTTTGCTAAGAAGTCCTTTAATTCTGTAACTGAGAGAAAAACGGAATTGCTTAAGCTTGTTCATACTGATCTAGCGGACTTTAGAAACACAGAAAGTAAAGGTGGTAAACACTACTACATCACTTTTATAGATGACTATTCGAGGTATTGCAAAGTTTACCTGTTAAGAACAAAAGATGAGGCTGAAATTATGTTCTTAAGGTATAAGGCAGAGGTAGAAAACCAATTAGACAGAAAAATCAAGAGACTTAGGTCTGATCGGGGTGGTGAATATGGAACTACGTTCCTTAAGGAGCTGTGTGAAAAGGAGGGAATAATAGATGAACTCTCCGCT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_227632.p1 GENE.R_Transcript_227632~~R_Transcript_227632.p1 ORF type:internal len:176 (+),score=25.88,gag_pre-integrs|PF13976.2|7.2e-16,rve|PF00665.22|1.9e-11 R_Transcript_227632:2-526(+)
AEAITAVGANKASTSAYIVESVDIWHARLGHVNYGSLKRLRKMNLLPNLTSDSSKKCEICVEAKFAKKSFNSVTERKTELLKLVHTDLADFRNTESKGGKHYYITFIDDYSRYCKVYLLRTKDEAEIMFLRYKAEVENQLDRKIKRLRSDRGGEYGTTFLKELCEKEGIIDELSA

Click here to download the sequence:
Link to NCBI Protein BLAST