Transcript Information: R_Transcript_228516.p1


Annotated TAIR IDAT1G17730.1
Annotated Gene Namevacuolar protein sorting 46.1
Annotated Gene Symbol(s)VPS46.1, CHMP1B
Annotation TypeOrtholog
Chromosome Positionchr1:6099210-6100153 | Forward length=203
E-Value3E-31
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.80765313958933
Replicate 21.1148478097149
Replicate 30.20271449200135
Condition 2: 8 Hour
Replicate 10.43337814065921
Replicate 20.59365173029696
Replicate 30.80316861152155
Condition 3: 24 Hour
Replicate 10.6094993069302
Replicate 20
Replicate 30.58108950496188


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_228516.p1 GENE.R_Transcript_228516~~R_Transcript_228516.p1 ORF type:5prime_partial len:113 (+),score=22.07 R_Transcript_228516:1-339(+)
CTTGAAGCTCCTTGGAAAAATTCTCATCATCACTACATAATTGAACATCACTTTGATCATTCAATTCAATCCCAGAATTATCAAATACTATCAAACATAATGGGAGGAAGCACAGAGAAGCTAATGAATCAGGTAATAGAGCTGAAGATGACATCAAAGTCCCTACAAAGACAAGCCAAGAAATGCGAAAAAGAAGAAAAATCAGAGAAGTTGAAGATCAAGAAGGCCATGGAGAAAGGCAACATGGATGGTGCTCGAATCTACGCCGAGAACGCCATCCGAGCACTTCAATTATCTCAGGCTGTCATCAAGGTTGGATGCAGTTGTTGCCAGGCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_228516.p1 GENE.R_Transcript_228516~~R_Transcript_228516.p1 ORF type:5prime_partial len:113 (+),score=22.07 R_Transcript_228516:1-339(+)
LEAPWKNSHHHYIIEHHFDHSIQSQNYQILSNIMGGSTEKLMNQVIELKMTSKSLQRQAKKCEKEEKSEKLKIKKAMEKGNMDGARIYAENAIRALQLSQAVIKVGCSCCQA*

Click here to download the sequence:
Link to NCBI Protein BLAST