Transcript Information: R_Transcript_228520.p1


Annotated TAIR IDAT1G73030.1
Annotated Gene NameSNF7 family protein
Annotated Gene Symbol(s)VPS46.2, CHMP1A
Annotation TypeOrtholog
Chromosome Positionchr1:27473938-27474848 | Forward length=203
E-Value2.9E-77
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.4824728137292
Replicate 23.1770717735188
Replicate 33.4661510836283
Condition 2: 8 Hour
Replicate 11.4498209508237
Replicate 23.0893323596375
Replicate 34.179647182326
Condition 3: 24 Hour
Replicate 12.1145348762359
Replicate 22.1765058115701
Replicate 30.7199902857532


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_228520.p1 GENE.R_Transcript_228520~~R_Transcript_228520.p1 ORF type:complete len:152 (+),score=41.03,Snf7|PF03357.17|4.2e-06,Snf7|PF03357.17|49 R_Transcript_228520:248-703(+)
ATGGTGCTCGAATCTACGCCGAGAACGCCATCCGAGCACTTCAATTATCTCAGGCTGTCATCAAGGTTGGATGCAGTTGTTGCCAGGCTTGACACTCAGGCTAAGATGCAGACTGTGTCCAAATCTATGGGCTCCATTGTCACCTCCCTTAGTTCTTCTCTTGCTACTGGTAACTTGCAGAAGATGTCAGAAACAATGGACAAGTTTGAGCAGCAGTTTGTGAACATGGAGGTTCAAGCAGAGTTTATGGAAAATTCAATGGCTGGATCAACCTCGCTTTCATTCCCTGAATCAGACGTTAAAAGTTTGATGCAACAAGTAGCTGACGACTATGGTTTGGAAGTTTCGGTTGGTCTTCCACAGCCTGCTGCCAACCCTGTCCCATTGAAGACGAGTGAGACAGTCGATGAGGATGATTTATCCAAGCGACTTGCAGAGCTGCAATCAAGAGGATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_228520.p1 GENE.R_Transcript_228520~~R_Transcript_228520.p1 ORF type:complete len:152 (+),score=41.03,Snf7|PF03357.17|4.2e-06,Snf7|PF03357.17|49 R_Transcript_228520:248-703(+)
MVLESTPRTPSEHFNYLRLSSRLDAVVARLDTQAKMQTVSKSMGSIVTSLSSSLATGNLQKMSETMDKFEQQFVNMEVQAEFMENSMAGSTSLSFPESDVKSLMQQVADDYGLEVSVGLPQPAANPVPLKTSETVDEDDLSKRLAELQSRG*

Click here to download the sequence:
Link to NCBI Protein BLAST