Transcript Information: R_Transcript_22904.p1


Annotated TAIR IDAT3G54280.2
Annotated Gene NameDNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases
Annotated Gene Symbol(s)RGD3
Annotation TypeOrtholog
Chromosome Positionchr3:20092361-20104153 | Forward length=2129
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.2586646109915
Replicate 22.6309108826639
Replicate 34.3054431518752
Condition 2: 8 Hour
Replicate 14.6379248807312
Replicate 25.3648740308624
Replicate 39.0713974397174
Condition 3: 24 Hour
Replicate 16.6119376814126
Replicate 24.8523711886506
Replicate 36.7821056776302


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_22904.p1 GENE.R_Transcript_22904~~R_Transcript_22904.p1 ORF type:complete len:2059 (+),score=503.61,DUF3535|PF12054.4|2.6,DUF3535|PF12054.4|44,DUF3535|PF12054.4|5.9e-101,SNF2_N|PF00176.19|8.7e-68,HEAT|PF02985.18|76,HEAT|PF02985.18|0.018,HEAT|PF02985.18|57,HEAT|PF02985.18|5.2,HEAT|PF02985.18|6.1e+03,HEAT|PF02985.18|0.17,HEAT|PF02985.18|24,HEAT|PF02985.18|2.5e+03,HEAT|PF02985.18|7.3e+03,HEAT|PF02985.18|0.0043,HEAT|PF02985.18|0.03,Helicase_C|PF00271.27|9.4e+03,Helicase_C|PF00271.27|1.9e-14,HEAT_2|PF13646.2|0.00019,HEAT_2|PF13646.2|2.9e+03,HEAT_2|PF13646.2|2.7e+02,HEAT_2|PF13646.2|0.27,HEAT_2|PF13646.2|5.5e+02,HEAT_2|PF13646.2|4.6e+03,HEAT_2|PF13646.2|1.7e+02,HEAT_2|PF13646.2|12,HEAT_2|PF13646.2|2,HEAT_EZ|PF13513.2|0.49,HEAT_EZ|PF13513.2|5.2e+03,HEAT_EZ|PF13513.2|1.1e+02,HEAT_EZ|PF13513.2|0.00034,HEAT_EZ|PF13513.2|2.6e+02,HEAT_EZ|PF13513.2|2.2e+03,HEAT_EZ|PF13513.2|8.5e+02,HEAT_EZ|PF13513.2|6.7e+02,HEAT_EZ|PF13513.2|22,HEAT_EZ|PF13513.2|2.1e+03 R_Transcript_22904:3771-9947(+)
ATGGCGGAACCACAGCCACCACAGCCTCCACCTCAGCAGCAATCGTCGTCTCGATTGAATCGCCTCTTAACTCTCCTCGACACCGGGTCGACTCAGCAGACTCGGTTCGCGGCTGCGAGGCAAATCGGGGACATAGCGAAATCGCACCCGCAGGAGCTCAACCCGTTGCTACGGAAAGTGTCCCAGTACCTGAGGTCGAAGAATTGGGACACTAGGGTTTCGGCGGCCAAGGCGATTGGCGCCATTGCCGAGAACTCCAAGCGCACTGTCTCCCTACACCAGCTCGTGAGCGGCACGTGCAGGAGGGTCGCCGAGGCTGGATTCCGAGGGCGCTCTTTTGAGGAGAGCTTAAAGCCGACGAATGAGGCAAGTATTTCTTCGTTTCGTAGCTTTGATATCAATAAAGTGTTGGAATTTGGTGTCTTGTTGGCCTCTGGGGGCCAGGAATATGATTTGAATGATGACTATAGTGTGAAAAACTCGAAAGAACGGTTAGCTCGACAGAAAAAGAACTTGAGGAGGAGATTAGGACTTGATATGTGTGAACAGTTTATGGATATGAGTGATATGATTAAAGATGAGGACCTTGTGGTTCTCCACAACAACAACATTAACAACACTCCTGTTGTTGCTGGTGGGAGTTTTAATACTAGTATTAATAGTAATAGTAGGAGGAGAGAGGGGTCATTTCGAGCATTTAGGTCGCAGAGACCAAGTGCTAGGGAGTTGAATTTGTTGAAAAGGAAGGCGAAGGTGAGCAGTAGTAGTGTGGTGAGTAGTACACCGAAAGGGGGTTCGGCGAGTGTTGGTGTTGGGGCTGAAGGGGGTGGTGGGTCGAAGGTGTGTGTGGTGGAGTCGACAACTGATGAGGATGTGGTGGGGGAACATGATGGAGGGGATGGGGGTTGGCCGTTTCAGGGGTTTGTGGAGCAGCTTATTATTGATATGTTTGATCCTGTTTGGGAGATTCGTCATGGGAGTATAATGGCATTGAGGGAGATTTTGACTTATCAGGGGGGATACGCTGGGGTGGTTTTGTCAGACTCGAACTACCAACGTGGAAGGGGAATGCTTGGTAGGAGTTCTAGTTTGAAGCTGGGGTTTCCTGTGAAGAGGGAGAGGGAGAAGGAGAGGGAGATTGACTTGAATATGCAAGTTGGGGATGATGACGGGTGTCTGGAGAGTTCAAAAAGATTGAAGCTTGATGGTGCTGAATTAGGTGCGGTTCAGGTTCCTGTGAAGGCGGAGCAGAATGGAGAAGCTCCCCCTTGTGGCCAGTTGAGTCCTGAGGTTGTTAGTGTTGGTCCTGAGATGATGAAGCTTGAACCTTGTCTTATGGAGGGAAACGTGGTTTGTGAAGGGGGTTCAAAGATGATGGGGGTTGTTGATAATTTGAAAGACAAGGGCTCTGCTGGGAAGGTTGAGGTTTCAGAGAATCTTGCTGGAAGTCTTGAGCTGATGAGCTTGGTTAGATCCACACGAGATTCTTGGCTTAGGAATTGTGAATTTCTTCAAGACTGTGCCATCTGCTTTCTTTGTGTTCTGTCATTGGATCGCTTTGGTGATTATGTATCAGATCAAGTGGTTGCTCCGGTGAGGGAAACATGTGCTCAAGCGTTAGGGGCTGTCCTCAAGTACATTGCTCCTGAGTTAGTCCGTGAGACTATGAATATTTTGCTGCAGATGCAAAACAGGCCAGAATGGGAGATCCGTCATGGGAGTCTCTTGGGGATTAAATACTTGGTCGCTGTGCGGCAGGAGATGCTCTCTGATATGCTTGGGTTTGTTCTTCCTGCTTGCAAGGCTGGACTTGAGGATCCTGATGATGATGTTAGAGCAGTTGCAGCTGATGCTCTTATACCCGCTGCTGCTTCTATTGTCGCGATGATGGATCAGACGTTGCATTCTATTGTAATGCTGCTGTGGGATATTTTGCTTGACCTAGATGATCTTAGCCCGTCCACCAGTAGTGTGATGAATCTCTTGGCAGAAATCTACTCCCATGCAGGGATGACTGGAAATGTACTTGATGAATTAACACTGGAGGTGAAGCAGGAACTTGATCTCAATGAAATTTCATCTTGCAAGGATGAGCCTGAATTGCCAGTGTTGAAAGAAAATCCTTATACTTTGTCAGCTCTGGCTCCGCGTTTATGGCCGTTTATGAGACATAGTATCACCTCAGTTCGCTATTCAGCTATCAGAACTCTGGAAAGGTTGCTTGAAGCTCGATATAGAAGACACATTTCAGAGCCATCTGAGGATTCATTTTGGCCTTCTGTGATATTAGGTGATACCCTTCGAATTGTTTTCCAGAATTTGCTTCTTGAGTCAAATGATGATATTTTGCTGTGCACTGAGAGGGTATGGAAGCTCTTGCTGCATTGTCCTGTTGTGGATCTGGTAGCAGCTGCAGGATCCCATATTCCTTCGTGGTTAGAACTGGCAACTACTCCTTATGGTTCCGCATTAGATATGTCAAAGATGTTTTGGCCAGTTGCAGCTCATCAAAAGAGGAGAGTTACAATAGCTGCAAAAATGAGGGCTGTCAAGCTAGACAAATTTTCTGGTAGAGTTTGTAGCCTTGGCACAACAAAAGGAACTGTTCCAGATGACAATGGAGATGCCTCCACCACCTCTGTCAAGGTAATTGTTGGTGCTGATGCAGAGAAGTCTGTAACTCATACTCGAGTAGTGGCAGCAGCGGCTTTGGGAATACTTGCTTCAAAATGGCCTGCGGAGTCAATCCACCATGTAACCGATCCACTTTGGAATGATGTTAAATCTTTATCAGGCGTTCAGCGTCAGGTGTCTTCCATGGTTCTGATATCCTGGTTCAAGGAACTGAAAAGTAGGGAAGTTTCAGCAGCCCAAGGAGTTAATCCTGCTCTTTTTGAACACTTTAAGAAATGGTTGTTAGACTTGTTATCCTGTACTGATCCTTCTTTGCCTACAAAAGATTCATCTCTTCCTTATGCAGAGCTTTCAAGAACATATTCCAAAATGCGCTGTGAAGCCGCTCACCTGTTCCAAACAATTGAAGCTTCTGGAATGTTTGTGGATCTTTTGTCAACTGGTTGTATCAATCTTGAAAACTTAGGCATAGATGATGCCATAAACGTTGCTTCCAAAGTCATATTGCCTAGCTATGATTATTCAGGGGAGAATCCTGCAGAAAGGCATGTTTTTGATGATGTAGAGTCATCAAGGCAACGGCTTCTTACAACGACTGGCTACCTGAAGTGTGTTCAAAGTAATTTGCATATTACAGTGTCTTCATTGATGGCTGCTGCCATTGTATGGATTTCTGATCTTCCTGCGAAGCTTAACCCAATAATTTTGCCCCTCATGGCTTCTATTAAGAGAGAGCAGGAGGAAATACTGCAGCAGAAGGCTGCTGAGGCCCTTGCTGAGCTGATTGGTGATTGCATTGCACGTAAACCTGGCCCAAATGAGAAACTAATAAAAAACCTCTGTAGCTTGACATGCATGGATCCTTCTGAAACACCACAGGCTGCAGTGATAACATCTATAGAAGTCATTGAGGATCAAGATCTCCTTTCATGTAGAAGCATGTCTGGTAATCAGAAAGCCAGGGGTCGTTCACATTCGAGTAGTGAGGATAGGTCAAAAGTTGAAGGCTTCATTAGCAGACGAGGGGCTGAACTTGCTCTCAAGTATTTGTGTATTAAATTTGGCTCTTCCTTGTTTGGCAAGATTCCAAAGCTGTGGGATTGCCTTACAGAAGTTCTTAAGCCCATTGATCTAGAAGGGGAAGCTCTTACTGAAGAGAAAAGGATAACATTAGCAATTGAATCTGCTAAGGACCCGCAGTTGTTGATAAATAACATACAAGTGGTTCGCTCAATTGCCCCTTTGCTGGATGATGCATTGAAGCCAAAACTGCTCACTCTCCTGCCGTGCATTTTCAGATGTGTTCGCCATCCCCATGTTGCGGTTAGATTAGCTGCTTCAAGATGCATTACTACAATGGCAAAGTCCATGATATTGAGTGTTATGGCATCCGTGGTTGAGAATGCAGTGCCTATGTTGGGAGATGGGATGTCAGTTCCTGCAAGACAAGGAGCAGGTATGCTTATCAGTCTGCTTGTACAAGGTTTGGGGGTCGAGCTTGTTCCATATGCTCCCTTGTTAGTTGTTCCTCTTCTCAGGTGCATGAGTGATACTGATGCTTCAGTAAGGCAGAGTGTGACACGGAGTTTTGCTGCACTTGTGCCTCTTCTTCCTTTGGCACGGGGCCTGCCTCCACCTGCTGGAATCAAGGATAATCTATTACGTGACAAAGAAGATGCGAAATTCTTGGAGCAGCTTCTTGATAACTCTAGCATTGATGACTATAAACTTTGTACTGAGGTGAAAGTGACTTTAAGGAGATACCAACAGGAAGGCATTAATTGGTTAGCTTTCCTGAGAAGATTTAAATTGCATGGGATTTTGTGTGATGATATGGGACTTGGTAAAACACTTCAAGCTTCTGCAATTGTTGCATCAGATATTGCAGAACATCGCATGGCAAGTAATGGTGATGAACTTCCACCATCATTAATTGTTTGCCCATCAACCCTTGTTGGCCATTGGGCATATGAGATTGAAAAATACATTGATCCTTCTGTTATGGATACCTTCCAGTATGTGGGCTCTGTTGAGGAGCGGATTTGCCTTAGAAGTCAGTTCAGCAAGCATAATATTATCATAACATCATATGATGTTGTGCGTAAAGATGTTGATTTTCTTGGGCAGCTTCGGTGGAACTACTGTATCTTGGATGAGGGACATGTCATTAAAAATGCAAAGTCTAAGATCACTGCTGCTGTGAAACAGTTGAAGGCCCAGAACCGTCTTATACTGAGTGGGACTCCAATCCAGAATAACATCTTGGATCTGTGGTCCCTTTTTGATTTTCTGATGCCAGGCTTCCTCGGAACTGAGCGACAATTTCAAGCTATGTATGGGAAGCCTTTGCTGGCTGCAAGAGATCCAAAATGCTCTGCCAAGGATGCTGAAGCAGGTGCCTTGGCTATGGAAGCACTGCACAAGCAGGTGATGCCTTTTCTACTCCGCCGAACAAAAGATGAGGTCTTATCTGATCTTCCTGAGAAAATCATCCAGGACAGATATTGTGACCTTAGCCCTGTACAGTTGAGACTTTATGAGCAGTATGCAGGCTCACATGCGAAAAAGGAAATATCAAGTATTGTTAGCCTAGATGTCTCGAAAGACTCTAAGGAGATCAAGGCAGCACCCAAAGCATCTTCCCATATTTTCCAGGCCCTTCAGTACCTGCTTAAACTCTGCAGTCATCCACTCTTGGTGGTAGGTGATAAAAGTGCAGATTCACTGAGATGCATCTTGTCAGATGTCCTACCAGGACCAGACATCAGTTCTGAACTACATAAGCTTCACCACTCCCCTAAGCTGATTGCTCTTCATGAGATCTTGGAGGAATGTGGAATAGGTGTGGATACTTCAAATTCTGATAGCATGATTAATGTTGGTCAGCATAGAGTTTTAATATTTGCCCAGCATAAGGCTTTGTTGGATATCATTGAAAGGGACTTGCTCCGTGCCCATATGAGGAATGTCACGTATTTGCGCCTGGATGGGTCAGTCGACATAGAAAAGCGTTTTGAGATTGTGAAAGCATTCAACTCAGATCCAACTATTGATGTATTGCTGCTCACAACGCATGTGGGTGGGCTTGGTTTGAATTTGACATCAGCTGACACCCTTGTATTTATGGAGCATGACTGGAATCCGATGCGCGATCTCCAGGCAATGGATAGAGCTCACAGGCTTGGTCAAAAGAAAGTAGTGAATGTCCATCGTCTCATCATGAGGGGAACTCTGGAAGAGAAAGTTATGAGCCTTCAGAAGTTCAAAGTATCAGTTGCTAATTCTGTCATCAATGCGGAGAACGCCAGCTTGAAGACAATGAACACAGATCAACTGCTCGACCTTTTCACACCAGCTGAGAACGGAAGAAAGGGTGGCAGCATGTTGAAGAACTCTGCTGGAAATTCAAATGAAAATCAGAAAGCAGGAGGCAGCGGTAAAGGATTAAAAGCTATCCTTAGTGGTCTGGAAGAGCTATGGGATCAGTCACAATACACTGAAGAGTACAATCTTGACCAGTTCTTATCAAAGCTCAATGGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_22904.p1 GENE.R_Transcript_22904~~R_Transcript_22904.p1 ORF type:complete len:2059 (+),score=503.61,DUF3535|PF12054.4|2.6,DUF3535|PF12054.4|44,DUF3535|PF12054.4|5.9e-101,SNF2_N|PF00176.19|8.7e-68,HEAT|PF02985.18|76,HEAT|PF02985.18|0.018,HEAT|PF02985.18|57,HEAT|PF02985.18|5.2,HEAT|PF02985.18|6.1e+03,HEAT|PF02985.18|0.17,HEAT|PF02985.18|24,HEAT|PF02985.18|2.5e+03,HEAT|PF02985.18|7.3e+03,HEAT|PF02985.18|0.0043,HEAT|PF02985.18|0.03,Helicase_C|PF00271.27|9.4e+03,Helicase_C|PF00271.27|1.9e-14,HEAT_2|PF13646.2|0.00019,HEAT_2|PF13646.2|2.9e+03,HEAT_2|PF13646.2|2.7e+02,HEAT_2|PF13646.2|0.27,HEAT_2|PF13646.2|5.5e+02,HEAT_2|PF13646.2|4.6e+03,HEAT_2|PF13646.2|1.7e+02,HEAT_2|PF13646.2|12,HEAT_2|PF13646.2|2,HEAT_EZ|PF13513.2|0.49,HEAT_EZ|PF13513.2|5.2e+03,HEAT_EZ|PF13513.2|1.1e+02,HEAT_EZ|PF13513.2|0.00034,HEAT_EZ|PF13513.2|2.6e+02,HEAT_EZ|PF13513.2|2.2e+03,HEAT_EZ|PF13513.2|8.5e+02,HEAT_EZ|PF13513.2|6.7e+02,HEAT_EZ|PF13513.2|22,HEAT_EZ|PF13513.2|2.1e+03 R_Transcript_22904:3771-9947(+)
MAEPQPPQPPPQQQSSSRLNRLLTLLDTGSTQQTRFAAARQIGDIAKSHPQELNPLLRKVSQYLRSKNWDTRVSAAKAIGAIAENSKRTVSLHQLVSGTCRRVAEAGFRGRSFEESLKPTNEASISSFRSFDINKVLEFGVLLASGGQEYDLNDDYSVKNSKERLARQKKNLRRRLGLDMCEQFMDMSDMIKDEDLVVLHNNNINNTPVVAGGSFNTSINSNSRRREGSFRAFRSQRPSARELNLLKRKAKVSSSSVVSSTPKGGSASVGVGAEGGGGSKVCVVESTTDEDVVGEHDGGDGGWPFQGFVEQLIIDMFDPVWEIRHGSIMALREILTYQGGYAGVVLSDSNYQRGRGMLGRSSSLKLGFPVKREREKEREIDLNMQVGDDDGCLESSKRLKLDGAELGAVQVPVKAEQNGEAPPCGQLSPEVVSVGPEMMKLEPCLMEGNVVCEGGSKMMGVVDNLKDKGSAGKVEVSENLAGSLELMSLVRSTRDSWLRNCEFLQDCAICFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAVLKYIAPELVRETMNILLQMQNRPEWEIRHGSLLGIKYLVAVRQEMLSDMLGFVLPACKAGLEDPDDDVRAVAADALIPAAASIVAMMDQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSHAGMTGNVLDELTLEVKQELDLNEISSCKDEPELPVLKENPYTLSALAPRLWPFMRHSITSVRYSAIRTLERLLEARYRRHISEPSEDSFWPSVILGDTLRIVFQNLLLESNDDILLCTERVWKLLLHCPVVDLVAAAGSHIPSWLELATTPYGSALDMSKMFWPVAAHQKRRVTIAAKMRAVKLDKFSGRVCSLGTTKGTVPDDNGDASTTSVKVIVGADAEKSVTHTRVVAAAALGILASKWPAESIHHVTDPLWNDVKSLSGVQRQVSSMVLISWFKELKSREVSAAQGVNPALFEHFKKWLLDLLSCTDPSLPTKDSSLPYAELSRTYSKMRCEAAHLFQTIEASGMFVDLLSTGCINLENLGIDDAINVASKVILPSYDYSGENPAERHVFDDVESSRQRLLTTTGYLKCVQSNLHITVSSLMAAAIVWISDLPAKLNPIILPLMASIKREQEEILQQKAAEALAELIGDCIARKPGPNEKLIKNLCSLTCMDPSETPQAAVITSIEVIEDQDLLSCRSMSGNQKARGRSHSSSEDRSKVEGFISRRGAELALKYLCIKFGSSLFGKIPKLWDCLTEVLKPIDLEGEALTEEKRITLAIESAKDPQLLINNIQVVRSIAPLLDDALKPKLLTLLPCIFRCVRHPHVAVRLAASRCITTMAKSMILSVMASVVENAVPMLGDGMSVPARQGAGMLISLLVQGLGVELVPYAPLLVVPLLRCMSDTDASVRQSVTRSFAALVPLLPLARGLPPPAGIKDNLLRDKEDAKFLEQLLDNSSIDDYKLCTEVKVTLRRYQQEGINWLAFLRRFKLHGILCDDMGLGKTLQASAIVASDIAEHRMASNGDELPPSLIVCPSTLVGHWAYEIEKYIDPSVMDTFQYVGSVEERICLRSQFSKHNIIITSYDVVRKDVDFLGQLRWNYCILDEGHVIKNAKSKITAAVKQLKAQNRLILSGTPIQNNILDLWSLFDFLMPGFLGTERQFQAMYGKPLLAARDPKCSAKDAEAGALAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSPVQLRLYEQYAGSHAKKEISSIVSLDVSKDSKEIKAAPKASSHIFQALQYLLKLCSHPLLVVGDKSADSLRCILSDVLPGPDISSELHKLHHSPKLIALHEILEECGIGVDTSNSDSMINVGQHRVLIFAQHKALLDIIERDLLRAHMRNVTYLRLDGSVDIEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFMEHDWNPMRDLQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQKFKVSVANSVINAENASLKTMNTDQLLDLFTPAENGRKGGSMLKNSAGNSNENQKAGGSGKGLKAILSGLEELWDQSQYTEEYNLDQFLSKLNG*

Click here to download the sequence:
Link to NCBI Protein BLAST