Transcript Information: R_Transcript_229102.p2


Annotated TAIR IDAT1G34070.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:12402283-12403209 | Forward length=308
E-Value3E-06
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.583934628302
Replicate 21.6484698673953
Replicate 31.9877747500793
Condition 2: 8 Hour
Replicate 11.5177189016888
Replicate 23.5112128510953
Replicate 33.5253128064388
Condition 3: 24 Hour
Replicate 10.47433486007653
Replicate 20.45568716716069
Replicate 31.2662308496552


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_229102.p2 GENE.R_Transcript_229102~~R_Transcript_229102.p2 ORF type:5prime_partial len:242 (+),score=43.90,UBN2_3|PF14244.2|5.2e-13,UBN2|PF14223.2|3e-13,UBN2_2|PF14227.2|1.4e-06 R_Transcript_229102:2-727(+)
TTCCTAAATCTCTTCCTCTTGTTTATATGGTATCAGAGTGGTAACGCTTCTATAATTTCTACTGTGCATCTTTCCTCTCCTTCTGCCATGTCTGATTCAATTATTATCTCCAATTCTCTTGAACCTTCAAATCTCTTTGTTGTTGTTTCTCTCTCTCACATCCAAAAACTCACTTCTACTACCTATATATCCTGGAAAACACAACTTGAGGCTACCCTGATTGGGTATGATCTCCAAAAATTTATTGATGGCACCATGTCTGTGCCTCCCAAAACCATTGCTAATGGCACTAATGCTATTAAAACAATCTCAAATCCTGCCTACTCTACTTGGTTGCGTCAAGACAAACAATTACTGGGTGCCCTCGTTGGAACTCTCTCCTCTTCCATTGTTCCTCTCATCTCACAGTGCTCTACTACCTTTGATGCTTGGCAAACTCTCAACAAGACATATGCTAACCCTTCCAAGGGACATATTAAACAAATCAAAGATCACTTGAAAAATATAACCAAACGTTCAAGGTCTGTCTCTGACTTCATGAATGATATCAAGCGCTGTACTGATCAACTTGCTGCACTTGGTCGTCCCCTTGATCCAGAGGACATTGTTGATCGTGTTCTTGATCAATTGAATGATTCTGACTTTGATAGCATTATTGCTGCAGTTCAAAGTTGCGACTCACCTATCTCCTTTGATGAACTTCAACAAAGCCTTATATGGTCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_229102.p2 GENE.R_Transcript_229102~~R_Transcript_229102.p2 ORF type:5prime_partial len:242 (+),score=43.90,UBN2_3|PF14244.2|5.2e-13,UBN2|PF14223.2|3e-13,UBN2_2|PF14227.2|1.4e-06 R_Transcript_229102:2-727(+)
FLNLFLLFIWYQSGNASIISTVHLSSPSAMSDSIIISNSLEPSNLFVVVSLSHIQKLTSTTYISWKTQLEATLIGYDLQKFIDGTMSVPPKTIANGTNAIKTISNPAYSTWLRQDKQLLGALVGTLSSSIVPLISQCSTTFDAWQTLNKTYANPSKGHIKQIKDHLKNITKRSRSVSDFMNDIKRCTDQLAALGRPLDPEDIVDRVLDQLNDSDFDSIIAAVQSCDSPISFDELQQSLIWS*

Click here to download the sequence:
Link to NCBI Protein BLAST