Transcript Information: R_Transcript_229645.p2


Annotated TAIR IDAT5G16486.1
Annotated Gene NameRNA-directed DNA polymerase (reverse transcriptase)-related family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:5383597-5384226 | Reverse length=209
E-Value4E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.373878781538
Replicate 20.79018334900047
Replicate 30.73892701923072
Condition 2: 8 Hour
Replicate 11.0531554816019
Replicate 20.96175835876067
Replicate 31.0734823485175
Condition 3: 24 Hour
Replicate 11.974865137867
Replicate 21.1857666070203
Replicate 31.7651374747498


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_229645.p2 GENE.R_Transcript_229645~~R_Transcript_229645.p2 ORF type:complete len:186 (+),score=30.38,zf-RVT|PF13966.2|1.6e+04,zf-RVT|PF13966.2|1.2e-14 R_Transcript_229645:2510-3067(+)
ATGGTTTTCATGGCTTGGAGGAGAATGTGTCAGGAGAAGAGATATGGTGGATTTCATATCAAGGAGGTACTAAGTTGGAATAAAAGTCTCATTATAAAATGGTTTTTCAAAATATTTTGCAGATCAAACTCCTTTTGGGAACGATGGATTCATGCTTACTACCTAAAAGGAAAGGATATTTGGCATATTAAACCCAAGCAAGGAGATTCTTGGGCTTGGAGGTGCATTTTGAAGGTCAGGGATGATTTTATAAATGTTGTAGGTGGATTACAGGAAGCTATTGCTATCTTTCAGAGCTGGACTTCTACTAATTCCATTGCAAAAGTGGCTTATGAACTGTTTAAGGGGCAGTGCATGAAGGTCTCATGGTTTAAGACTATTTGGGACTCTGTTAATCTACTCAAGCATTCCATAATTGCAGTTCTGGCTATTCAGAATGCTCTACCAACTGTTGATAACATTGTGTCAAGAGGGATGCAGTGGATCAACAGGTGCATTCTCTGCAAAAAGGAAGCTGAATCTAGGGATGACCTATTCTTCCATTGTGATTTTGCATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_229645.p2 GENE.R_Transcript_229645~~R_Transcript_229645.p2 ORF type:complete len:186 (+),score=30.38,zf-RVT|PF13966.2|1.6e+04,zf-RVT|PF13966.2|1.2e-14 R_Transcript_229645:2510-3067(+)
MVFMAWRRMCQEKRYGGFHIKEVLSWNKSLIIKWFFKIFCRSNSFWERWIHAYYLKGKDIWHIKPKQGDSWAWRCILKVRDDFINVVGGLQEAIAIFQSWTSTNSIAKVAYELFKGQCMKVSWFKTIWDSVNLLKHSIIAVLAIQNALPTVDNIVSRGMQWINRCILCKKEAESRDDLFFHCDFA*

Click here to download the sequence:
Link to NCBI Protein BLAST