Transcript Information: R_Transcript_229831.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value1E-19
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.039423241802848
Replicate 20
Replicate 30.14842378572021
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20.095271096719556
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_229831.p1 GENE.R_Transcript_229831~~R_Transcript_229831.p1 ORF type:complete len:463 (-),score=105.88,UBN2_3|PF14244.2|1.2e-35,Retrotrans_gag|PF03732.13|1.4e-08,Retrotrans_gag|PF03732.13|1.1e+03,UBN2|PF14223.2|0.0049,UBN2|PF14223.2|6.7,UBN2|PF14223.2|1.1e+04 R_Transcript_229831:913-2301(-)
ATGAGCGCTACCAGGAATTCAATTTCTTTTGCAGACATGCAAAATCCTTTGTTCCTGCATCCAAGTGATGGTCCTTCTTCTATTGCTCTGTCTGATAAGCTGATTGGAGCTTCGAATTATAGATCATGGCGACGAGCAATGGAAATCAATCTGGCAGCAAAGCGTAAGCTAGGTTTTGTCAATGAAACAGTAACTAGACCTGATAATGATCCTGTCAAGGCAGATCAGTGGGACACAGCTAATAGCACTGTGATTTCGTGGATTCTCAATTCTGTTTCTGACTCAATTCAAAGGTCTGTTCTCTTTATTGACACTGCTGTTGGAATTTGGAAACAACTTGAAACTAAATTCGCTTTAAGCAATGGATCAAGGAAGTACAAGTTGAATAGAGATGTTTATGATCTGAGACAAGAACATATTGCTATTAGTGACTTTTATACTCGGATGAAAAGTCTTTGGGAAGAATTGGAATCTTTGACAATTTTACCTAAACTGACTGTGGTGACACCTGAAATGCAGAATTTTCTGAATGCTCTTCATAAACATCAAGAGGAATTAAGACATTTTCAATTCCTGAATGGCCTTGATAATGTGTACCAGAATCAGAGAAGTAATATTCTCATGATGATTCCTTTGCCTTCTGTTGAAGAAGCCTGCTCTCTTATTCAGCAGGAAGAGTCACAAAAGGATATTTTAGGTGATATTCCTAAAATTGTTGTTGAGCCTTCTGCACTCTACAGTCGAGGTGACAAGCCTGTCAAGCCTTATGCCAATGCTGTGTGCAACAAATGTGGAGGCAAAGGTCATACTGTTGATCGATGCTGGAAAGTCATTGGTTATCCAAAGTGGCATCCTATGCATAAAAAGGGACCATCTCAGGTGCATCATCCTCAATCCAAACATCAGAATTGGGATAAAGGAAAAAAATCTGTCAATGTTAACAATGCAGCAAGCAGTACTTCTGGCAACATTGTCTTCACTCAGGATCAATTTGCTCAACTTCTAAGGAGTATTCCTGGTTCTTCTGGTTCTTCTTTTGCTCAGTCTCTCAGTTCTGAAACTGATGATGAAATTGAGGCCAACTTTGCAGGTATAGCCTTCTGCAATCATGTTGCTTCTTTGTCTGATGAATGGATAATTGACTCGGGCGCATCTGATCACATGACAGCAGATGTGACTAAGCTTGCTCATATTAAACATGTTGATACTAAAATAAAAATCAACTTGCCTGATGGTCATACTTCTCCTATTACTCATGTTGGCACTGCAATCTTGTCTAATGACATAATTTTGCAAAATGTTCTCTGTGTGCCGAGCTTCAAACACAACCTTCTTTCAGTTGCTAAACTTGTTCAACATGGCAACTATATTGTGCTATTTTATGATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_229831.p1 GENE.R_Transcript_229831~~R_Transcript_229831.p1 ORF type:complete len:463 (-),score=105.88,UBN2_3|PF14244.2|1.2e-35,Retrotrans_gag|PF03732.13|1.4e-08,Retrotrans_gag|PF03732.13|1.1e+03,UBN2|PF14223.2|0.0049,UBN2|PF14223.2|6.7,UBN2|PF14223.2|1.1e+04 R_Transcript_229831:913-2301(-)
MSATRNSISFADMQNPLFLHPSDGPSSIALSDKLIGASNYRSWRRAMEINLAAKRKLGFVNETVTRPDNDPVKADQWDTANSTVISWILNSVSDSIQRSVLFIDTAVGIWKQLETKFALSNGSRKYKLNRDVYDLRQEHIAISDFYTRMKSLWEELESLTILPKLTVVTPEMQNFLNALHKHQEELRHFQFLNGLDNVYQNQRSNILMMIPLPSVEEACSLIQQEESQKDILGDIPKIVVEPSALYSRGDKPVKPYANAVCNKCGGKGHTVDRCWKVIGYPKWHPMHKKGPSQVHHPQSKHQNWDKGKKSVNVNNAASSTSGNIVFTQDQFAQLLRSIPGSSGSSFAQSLSSETDDEIEANFAGIAFCNHVASLSDEWIIDSGASDHMTADVTKLAHIKHVDTKIKINLPDGHTSPITHVGTAILSNDIILQNVLCVPSFKHNLLSVAKLVQHGNYIVLFYD*

Click here to download the sequence:
Link to NCBI Protein BLAST