Transcript Information: R_Transcript_229837.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value6E-18
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.081851842846272
Replicate 20.094153813526
Replicate 30
Condition 2: 8 Hour
Replicate 10.21960416993045
Replicate 20
Replicate 30.48838414225256
Condition 3: 24 Hour
Replicate 10.41179923278393
Replicate 20.098902506235773
Replicate 30.09815114209371


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_229837.p1 GENE.R_Transcript_229837~~R_Transcript_229837.p1 ORF type:complete len:223 (+),score=43.51,UBN2_3|PF14244.2|1.4e-35,Retrotrans_gag|PF03732.13|6.4e-09 R_Transcript_229837:152-820(+)
ATGAGTGCTGGCAAAAACTCAATCTCATATGCTGATATGCAGAATCCTTTGTTCTTGCATCCAAGTGATGGTCCTTCATCTATTGCACTTTCTGATAAACTGATTGGAGCTTCGAATTATAGATCATGGCGTCGAGCTATGGAAATAAATTTGGCGGCAAAACATAAACTAGGTTTCGTCAATGGAATAGTTACTCGACCTGATGATGATCCAGCTAAGGCAGATCAATGGGACACAGCAAACAGCACTTTAATCTCTTGGATTCTGAATTCTGTTTTTGATTCTATTCAAAGGTCAGTTTTATTCATTGATACTGCTGCTGGAATCTGGAAACAACTTGAAACTAGATTTGCTCTTAGTAATGGATCGCGCAAGTACAAGCTGAATAAAGATGTTTATGATCTCAGACAAGAAAATGTTGCTATAAGTGATTTTTACACTCAGATGAAAAGTCTATGGGAGAAATTGGAATCATTGACTGTTCTGCCTAAACTTACTGTTGTGACGCCTGAAATGCAAGAGTTTCTAAGAGCTCTGCATAAACATCAAGAGGAATTGAGACTTTTTCAATTTCTGAATGGACTTGATAGTGTTTACCAGAATCAGAGAAGCAATATTCTCATGATGATTCCTTTACCTTCTGTTGAAGAAGCTTGTTCTCTGATTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_229837.p1 GENE.R_Transcript_229837~~R_Transcript_229837.p1 ORF type:complete len:223 (+),score=43.51,UBN2_3|PF14244.2|1.4e-35,Retrotrans_gag|PF03732.13|6.4e-09 R_Transcript_229837:152-820(+)
MSAGKNSISYADMQNPLFLHPSDGPSSIALSDKLIGASNYRSWRRAMEINLAAKHKLGFVNGIVTRPDDDPAKADQWDTANSTLISWILNSVFDSIQRSVLFIDTAAGIWKQLETRFALSNGSRKYKLNKDVYDLRQENVAISDFYTQMKSLWEKLESLTVLPKLTVVTPEMQEFLRALHKHQEELRLFQFLNGLDSVYQNQRSNILMMIPLPSVEEACSLI*

Click here to download the sequence:
Link to NCBI Protein BLAST