Transcript Information: R_Transcript_230072.p1


Annotated TAIR IDAT5G28780.1
Annotated Gene NamePIF1 helicase
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:10812907-10814173 | Reverse length=337
E-Value2E-37
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.12764308359943
Replicate 20
Replicate 30.16018697619687
Condition 2: 8 Hour
Replicate 10.34245964961182
Replicate 21.0945886215965
Replicate 30.50773736001082
Condition 3: 24 Hour
Replicate 10.64217642594976
Replicate 20.15423257965439
Replicate 30.15306087193634


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_230072.p1 GENE.R_Transcript_230072~~R_Transcript_230072.p1 ORF type:5prime_partial len:143 (+),score=-0.38,PIF1|PF05970.10|4.4e-14,Herpes_Helicase|PF02689.10|5.4e-07 R_Transcript_230072:1-429(+)
CTGCCTAATCATGAGCTCAAATTGAAAGTAGGTGCTCCGATCATGTTGCTTCGAAATATTGATTGCTCAGGTGGTTTATGCAATGGTACTCGATTACGTATAACTAAACTGGGTAGAAAAGTTATCGAAGCAGATGTTCTTACTGGTAGCAAGATTGGAAATAAGGTTTTCATACCTCGATTTTCGCTATCGTCATCAGATTCACACTTGCCATTCAAATTTACTCGGAGACAATTTCCCATTAGGATATGTTTCGCTATGACAATTAGTAAAAGTCAAGGTCAGTCTCTTGAACGTGTGGGTGTATATTTACCCACACCGGTTTTCACGCATGGTCAACTTTATGTTGCTATTTCACGCGTGACCAATAGAAAAGGTCTAAGTTTCTCACATTGGATGAGGATGGACGACCATGTAACAAAACTTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_230072.p1 GENE.R_Transcript_230072~~R_Transcript_230072.p1 ORF type:5prime_partial len:143 (+),score=-0.38,PIF1|PF05970.10|4.4e-14,Herpes_Helicase|PF02689.10|5.4e-07 R_Transcript_230072:1-429(+)
LPNHELKLKVGAPIMLLRNIDCSGGLCNGTRLRITKLGRKVIEADVLTGSKIGNKVFIPRFSLSSSDSHLPFKFTRRQFPIRICFAMTISKSQGQSLERVGVYLPTPVFTHGQLYVAISRVTNRKGLSFSHWMRMDDHVTKL*

Click here to download the sequence:
Link to NCBI Protein BLAST