Transcript Information: R_Transcript_230199.p1


Annotated TAIR IDAT3G21000.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:7363921-7365138 | Forward length=405
E-Value2E-08
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.64206395318106
Replicate 20.10550904731808
Replicate 30.46043693660608
Condition 2: 8 Hour
Replicate 10.73826728484156
Replicate 20.44946496163187
Replicate 30.54728474232322
Condition 3: 24 Hour
Replicate 11.3843903855902
Replicate 20.55415223343159
Replicate 30.1099884657633


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_230199.p1 GENE.R_Transcript_230199~~R_Transcript_230199.p1 ORF type:complete len:199 (+),score=42.85,UBN2|PF14223.2|2.3e+02,UBN2|PF14223.2|1.8e-29,UBN2_2|PF14227.2|1e-12,UBN2_3|PF14244.2|1.6e-09,DUF4219|PF13961.2|2.6e-08 R_Transcript_230199:321-917(+)
ATGGCAGCAAATAATTTTTCAATCCCAATTCCAACATTTAATGGGGAAAATTATCATTCATGGGTTATCAAAATCAAATCATACTTGAAAGCCTCTAACCTGTGGGAAGTTGTTGAGAGTGAAGTTGATCTCACCCCACTAACACCAAATCCTACCCTAAACCAAATCAAGAAGTATGAGGAAGACAATGCGAAGAAGCCTAAAGCACTTTCTTATCTACATTCCGCTGTTTCTAAGGGAGTTTTCACAAGTATCATGGCTTGTGAGACACCAAATGAAGCATGGGAGAAACTTAAAGAAGAGTTTAAGGGCAATGAACAAACCAAGACGATGCAAATTCTCAATCTTAAAAGAGAATTTGTGTTTTCAAGGATGAAAAAATCTGAAACTGTGAAGGATTATGGTAACAAGCTCATGTCCATTGTCAATAACATCAAGTGGCTTGGAGAGAAGTTTCCTACCCAAAGATTGGTAGACAAGCTTCTTTTAACCCTCCCAGAAAGGTATGAGTCAAAAATATCATCAACTGAAGATACTAAAGATTTGTCTAAAGTCACTTTTGTAGAGTTGCTTAATGCTCTTCAAACCGTGGACTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_230199.p1 GENE.R_Transcript_230199~~R_Transcript_230199.p1 ORF type:complete len:199 (+),score=42.85,UBN2|PF14223.2|2.3e+02,UBN2|PF14223.2|1.8e-29,UBN2_2|PF14227.2|1e-12,UBN2_3|PF14244.2|1.6e-09,DUF4219|PF13961.2|2.6e-08 R_Transcript_230199:321-917(+)
MAANNFSIPIPTFNGENYHSWVIKIKSYLKASNLWEVVESEVDLTPLTPNPTLNQIKKYEEDNAKKPKALSYLHSAVSKGVFTSIMACETPNEAWEKLKEEFKGNEQTKTMQILNLKREFVFSRMKKSETVKDYGNKLMSIVNNIKWLGEKFPTQRLVDKLLLTLPERYESKISSTEDTKDLSKVTFVELLNALQTVD*

Click here to download the sequence:
Link to NCBI Protein BLAST