Transcript Information: R_Transcript_230968.p1


Annotated TAIR IDAT1G27595.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075); BEST Arabidopsis thaliana protein match is: HEAT repeat-containing protein (TAIR:AT5G01400.1); Has 593 Blast hits to 297 proteins in 111 species: Archae - 0; Bacteria - 3; Metazoa - 139; Fungi - 49; Plants - 57; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:9596475-9602917 | Forward length=961
E-Value1E-22
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.0562135454931
Replicate 24.6658445369551
Replicate 35.3449054391022
Condition 2: 8 Hour
Replicate 13.808912325127
Replicate 21.490725456079
Replicate 33.0252684367312
Condition 3: 24 Hour
Replicate 13.0610409636939
Replicate 23.9209349138804
Replicate 35.3503278123527


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_230968.p1 GENE.R_Transcript_230968~~R_Transcript_230968.p1 ORF type:complete len:90 (-),score=10.26,Symplekin_C|PF12295.4|5.3e-06 R_Transcript_230968:10-279(-)
ATGAAATGCGTGTCCCAAACACAGCCACACTCTTTCCGTGTATTGTTGCAGTTACCTGCACCTCAGCTTGAAAGTGCTCTAAACAAATACACTAGTCTCAGAGGGCCTCTTGTCGCTTATTCAAGCCAATCCAGCATAAAAAGTTCATTACCGAGATCAACCCTTTCTGTTCTTGGTCTTGCAAATGAATCGCACTTTACACCACCACATGTTGCATCTCCCATGCATACTTCTGATTCGAGTCCTGTCCGTGGGGTGACACCAACGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_230968.p1 GENE.R_Transcript_230968~~R_Transcript_230968.p1 ORF type:complete len:90 (-),score=10.26,Symplekin_C|PF12295.4|5.3e-06 R_Transcript_230968:10-279(-)
MKCVSQTQPHSFRVLLQLPAPQLESALNKYTSLRGPLVAYSSQSSIKSSLPRSTLSVLGLANESHFTPPHVASPMHTSDSSPVRGVTPT*

Click here to download the sequence:
Link to NCBI Protein BLAST