Transcript Information: R_Transcript_231939.p1


Annotated TAIR IDAT5G55820.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Inner centromere protein, ARK-binding region (InterPro:IPR005635); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:22586287-22594035 | Forward length=1826
E-Value1E-22
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.42849592686323
Replicate 30.93496888147561
Condition 2: 8 Hour
Replicate 10.49971152953562
Replicate 20.45634452737113
Replicate 30.9261025826728
Condition 3: 24 Hour
Replicate 10.23426333905821
Replicate 21.1252683107437
Replicate 30.89337570150601


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_231939.p1 GENE.R_Transcript_231939~~R_Transcript_231939.p1 ORF type:3prime_partial len:98 (+),score=10.22 R_Transcript_231939:93-383(+)
ATGGCGAAGATAGAGAAGCTATTCGTACAGATCTTCGAGAGAAAGAGGTGGATAATCGAACACTTGAATCAACAAAAAGAACTCTACGACCAACACCTCGTTTCCAAGCTCCTGATTCAAGGAATCACTCCACCTCCTTGGCTTCTCAATCCTCAATTTCCTTCTTCTACTTGTTCGGATCTCACTGAGTTAAATAAAGAGGAGCTTATTTCTGGAATACTACTGCCACGGCCTGGAACTTTGGCCACTTATCCCAGTGGACCTTGCTTTGTGTATGATAGACCAGTTGCA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_231939.p1 GENE.R_Transcript_231939~~R_Transcript_231939.p1 ORF type:3prime_partial len:98 (+),score=10.22 R_Transcript_231939:93-383(+)
MAKIEKLFVQIFERKRWIIEHLNQQKELYDQHLVSKLLIQGITPPPWLLNPQFPSSTCSDLTELNKEELISGILLPRPGTLATYPSGPCFVYDRPVA

Click here to download the sequence:
Link to NCBI Protein BLAST