Transcript Information: R_Transcript_23215.p1


Annotated TAIR IDAT5G60370.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Defects-in-morphology protein 1-like, mitochondrial (InterPro:IPR019190); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57110.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:24282858-24284760 | Forward length=413
E-Value1.9E-111
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.2796884018528
Replicate 25.4417017133984
Replicate 35.8842995659841
Condition 2: 8 Hour
Replicate 15.0544216634222
Replicate 26.1543711489502
Replicate 37.4521520666268
Condition 3: 24 Hour
Replicate 18.0036392169978
Replicate 28.3466002682231
Replicate 37.3293690006583


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_23215.p1 GENE.R_Transcript_23215~~R_Transcript_23215.p1 ORF type:5prime_partial len:436 (+),score=73.94,Exo5|PF09810.5|1.6e-52,PDDEXK_1|PF12705.3|3.5e-09 R_Transcript_23215:1-1308(+)
TTTGTCAAACAATCATTTCAAATGCCTGATTCCCCAACTCACACTCTCACCACCCACGATCTCCATCACCATCACCATCACCTTCACCTTCACCTTCACCTTCACCCCAACGAAACCAACAACAACCAACGATCAGAAAACCTCCATGAAAACACACATGAACCTCACAGTCAAATCCCATTTGAAATTGAAATTATAAGCGAAGAAGAAATGGCACTCATTGAAGCCGCCTTCTCTTTAGCACGCTCTTCTTCTTCTTGTACTGCTCTTCCTCTGTCTCCTCGTTTATCTCTTTCGAACTCTATTGCCCATTTCTCAAAACGGGCATTGCCCGCTTTATCCGGGTCATCGGGTTCGGTTTGTGATGTTGAGGATTCGTGTCAGTTGAGGAAATCCAACAAGAAATGCAAAGTGCCCCAGTCGCCTTTGAGTCGGTTTCGGAGGAAAAAAGGGCTCTTTGTTACTGACATAACTGCCACTGAATGGTGTGAGAAACAAATGGAGTTCGTTCTCCAATTCGGAAAGCCAGAACTCACAAACGCAATGAAAGCAGGGATTTCTCGGCATGCGAAGCTAGAGGAAGAGGTAATAAAAAAAGTGGAAGTACGTGTAGAATCACTTGCAGATATATGGGCTTTGAAGTTCATGAACTTTATTGTTTGTGCAAACCAGCTGTTGTTTGAGGGATTAACCCGTGAAGTGCCCGTAGTTGGCCACATTCAAGGAGTATGGATGGTTGGAGTGATTGATGAACTCCGGATGCCTGTAACAGGGAACAATAGGATTTTGACACTCATTGATACAAAGACTCGTAAGCAACCAAGGCTTCCTGCTGAACCACAAAGCAGAAATGGAAGGCTGCAATTGATGTGCTACAAGTTGCTGTGGGACAAATTAGTCTCTGATAACTTTCCTTCTGAACAATTTTTTGATTTCTTTTCCTTGGATCCACAACATATTTTATCAGATGAAGTAAAGAAGAGTACAGCTGACTCCGGTTTAGCTGCTGAGACCCTTGGTGAAGTTGTGAGGTATTTCAGCAATGCTTGTTCCACACTGCCTCCTGCTCATGATCAACTTCTCTTAAGATATGAACTCCAAGAGGATTACTCGTTGATCGGTGAGGATGAATTCACATATGATGGTGACTGGCTTCAGGCGCAAATTCACAGCTGCCTTGAGTTCTGGCAGGGAGAGCGAGATGCCAAGTATGTTCAACAGGAGGAGCGTTGGAAATGCCGGTATTGCCAGTTTGCCTCTGTCTGTCCTTCCCAAAATGATAGTACTAATTCTCAAACAATCTCATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_23215.p1 GENE.R_Transcript_23215~~R_Transcript_23215.p1 ORF type:5prime_partial len:436 (+),score=73.94,Exo5|PF09810.5|1.6e-52,PDDEXK_1|PF12705.3|3.5e-09 R_Transcript_23215:1-1308(+)
FVKQSFQMPDSPTHTLTTHDLHHHHHHLHLHLHLHPNETNNNQRSENLHENTHEPHSQIPFEIEIISEEEMALIEAAFSLARSSSSCTALPLSPRLSLSNSIAHFSKRALPALSGSSGSVCDVEDSCQLRKSNKKCKVPQSPLSRFRRKKGLFVTDITATEWCEKQMEFVLQFGKPELTNAMKAGISRHAKLEEEVIKKVEVRVESLADIWALKFMNFIVCANQLLFEGLTREVPVVGHIQGVWMVGVIDELRMPVTGNNRILTLIDTKTRKQPRLPAEPQSRNGRLQLMCYKLLWDKLVSDNFPSEQFFDFFSLDPQHILSDEVKKSTADSGLAAETLGEVVRYFSNACSTLPPAHDQLLLRYELQEDYSLIGEDEFTYDGDWLQAQIHSCLEFWQGERDAKYVQQEERWKCRYCQFASVCPSQNDSTNSQTIS*

Click here to download the sequence:
Link to NCBI Protein BLAST