Transcript Information: R_Transcript_23219.p1


Annotated TAIR IDAT5G60370.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Defects-in-morphology protein 1-like, mitochondrial (InterPro:IPR019190); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57110.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:24282858-24284760 | Forward length=413
E-Value1E-29
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.6632239978328
Replicate 21.8162889633476
Replicate 32.93269650885
Condition 2: 8 Hour
Replicate 12.2876067597772
Replicate 23.0175584491565
Replicate 33.7056921335738
Condition 3: 24 Hour
Replicate 15.4812757740885
Replicate 23.815788735394
Replicate 32.8779680903187


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_23219.p1 GENE.R_Transcript_23219~~R_Transcript_23219.p1 ORF type:5prime_partial len:289 (+),score=37.73,Exo5|PF09810.5|4.2e-30 R_Transcript_23219:1-867(+)
TTTGTCAAACAATCATTTCAAATGCCTGATTCCCCAACTCACACTCTCACCACCCACGATCTCCATCACCATCACCATCACCTTCACCTTCACCTTCACCTTCACCCCAACGAAACCAACAACAACCAACGATCAGAAAACCTCCATGAAAACACACATGAACCTCACAGTCAAATCCCATTTGAAATTGAAATTATAAGCGAAGAAGAAATGGCACTCATTGAAGCCGCGTTCTTGTTAGCACGCTCTTCTTCTTCTTCTTCTGCTCTTCCTTTATCTCCTCGTTTATCTCTTTCGAACTCTATTGCCCATTTCTCAAAACGGGCATTGCCCGCTTTATCCGGGTCATCGGGTTCGGTTTGTGATGTTGAGGATTCGGGTCAGTTGAGGAAACCCAACAAGAAATGTAAAGTGCCCCAGTCGCCTTTGAGTCGGTTTCGGAGGAAAAAAGGGCTCTTTGTCACTGACATCACTGCCACTGAATGGTGTGAAAAACAAATGGAGTTCGTTCTCCAATTCGGAAAGCCAGAACTCACAAACGCAATGAAAGCAGGGATTTCTCGGCATGCGAAGCTAGAGGAAGAGGTAATAAAAAAAGTGGAAGTACGTGTAGAATCACTTGCAGATATATGGGCTTTGAAGTTCATGAACTTTATTGTTTGTGCAAACCAGCTGTTGTTTGAGGGATTAACCCGTGAAGTGCCCGTAGTTGGCCACATTCAAGGAGTATGGATGGTTGGAGTGATTGATGAACTCCGGATGCCTGTAACAGGGAACGATAGGATTTTGACACTCGTTGATACAAAGACTCGAAGCAACCAAGGCTTCCTGCTGAACCACAAAGCAGAAATGGAAGGCTGCAATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_23219.p1 GENE.R_Transcript_23219~~R_Transcript_23219.p1 ORF type:5prime_partial len:289 (+),score=37.73,Exo5|PF09810.5|4.2e-30 R_Transcript_23219:1-867(+)
FVKQSFQMPDSPTHTLTTHDLHHHHHHLHLHLHLHPNETNNNQRSENLHENTHEPHSQIPFEIEIISEEEMALIEAAFLLARSSSSSSALPLSPRLSLSNSIAHFSKRALPALSGSSGSVCDVEDSGQLRKPNKKCKVPQSPLSRFRRKKGLFVTDITATEWCEKQMEFVLQFGKPELTNAMKAGISRHAKLEEEVIKKVEVRVESLADIWALKFMNFIVCANQLLFEGLTREVPVVGHIQGVWMVGVIDELRMPVTGNDRILTLVDTKTRSNQGFLLNHKAEMEGCN*

Click here to download the sequence:
Link to NCBI Protein BLAST