Transcript Information: R_Transcript_23232.p1


Annotated TAIR IDAT3G01610.1
Annotated Gene Namecell division cycle 48C
Annotated Gene Symbol(s)CDC48C, emb1354
Annotation TypeOrtholog
Chromosome Positionchr3:231787-235057 | Forward length=820
E-Value1.2E-283
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.6570432423768
Replicate 22.6657938859871
Replicate 33.6285158707327
Condition 2: 8 Hour
Replicate 13.760223516687
Replicate 23.9746670261841
Replicate 35.5969295141459
Condition 3: 24 Hour
Replicate 16.0795160615081
Replicate 24.5870671453196
Replicate 35.1609460869951


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_23232.p1 GENE.R_Transcript_23232~~R_Transcript_23232.p1 ORF type:complete len:827 (+),score=164.82,AAA|PF00004.25|6e-41,AAA|PF00004.25|1.5e-41,RuvB_N|PF05496.8|1.6e-06,RuvB_N|PF05496.8|0.00019,AAA_2|PF07724.10|1.2e-06,AAA_2|PF07724.10|0.03,AAA_17|PF13207.2|0.00064,AAA_17|PF13207.2|0.00058,AAA_5|PF07728.10|0.00012,AAA_5|PF07728.10|0.017,AAA_16|PF13191.2|0.002,AAA_16|PF13191.2|0.0065,AAA_16|PF13191.2|1.8e+03,AAA_22|PF13401.2|0.026,AAA_22|PF13401.2|0.031,AAA_22|PF13401.2|1.6e+02,TIP49|PF06068.9|6.9e+03,TIP49|PF06068.9|2e-05,TIP49|PF06068.9|0.082,RNA_helicase|PF00910.18|4.3e+03,RNA_helicase|PF00910.18|0.003,RNA_helicase|PF00910.18|0.083,AAA_33|PF13671.2|0.017,AAA_33|PF13671.2|0.012,AAA_14|PF13173.2|0.0015,AAA_14|PF13173.2|0.096,IstB_IS21|PF01695.13|0.0062,IstB_IS21|PF01695.13|0.039,AAA_28|PF13521.2|0.0013,AAA_28|PF13521.2|0.97,AAA_28|PF13521.2|1.5e+03,AAA_18|PF13238.2|0.017,AAA_18|PF13238.2|0.15,Bac_DnaA|PF00308.14|0.00063,Bac_DnaA|PF00308.14|4.5,AAA_19|PF13245.2|0.1,AAA_19|PF13245.2|0.069,Viral_helicase1|PF01443.14|7.4e+03,Viral_helicase1|PF01443.14|0.041,Viral_helicase1|PF01443.14|0.14,Viral_helicase1|PF01443.14|3.4e+03,Cytidylate_kin2|PF13189.2|0.0021,Cytidylate_kin2|PF13189.2|13,TsaE|PF02367.13|0.21,TsaE|PF02367.13|0.099,Mg_chelatase|PF01078.17|0.2,Mg_chelatase|PF01078.17|0.071,AAA_3|PF07726.7|0.025,AAA_3|PF07726.7|1.4 R_Transcript_23232:112-2592(+)
ATGGGCAGAAAAGGAGGAGGAGCTCCGCCGTCAAGACGGCCGTCAACACTATCTCCCGCGATAATCCACCGCCGTATCGATGCCTGTAAAATCAACCACCTCTCTCCCGACTTAATCGCCGAACACCTCTATTCCACTTACCCTGACTACAAACACTACAAACTCATCCCTTTCCGCACCAAAATCACCCAACTCCTCCACTCTCGCCGCCCCGTTTCAAACCCTAACCCTAACCCTAACCAACAACAGGCATCAGATGATTCGGGTTCGGGTTCGGAGCCTAGAAGAAAGAAGCAAAAGAAGCAATCAATTGTGGAGAGAGAGGAGGAAAAGCTTCTAAGGAGAGAGAATGATTACATCAGACGAAAGAGTAGAGAGAACAGGGTTTCTGTCTCCGACGACTCGAACCAGGATTCTGATTCGGATACGGAGCCCTCTGTCTCGACTTCCGAGGACGCAATCTACGACGAGGACGTCGAGCCGGAGTTCGACCTGATGAAATCCATGCTCAGGGCGAACTACGGCGGCTCAAAACCGAGCCCGAGCCCGAAACTGAAGCGGAAGATCAATTTGGAGGTGGAGGAGGAGGTGAGGAGAGAGAAGGAGAAGGCGGTGATGAGCGAAGTGGTGCAAGACGACGAGGAGCGAGAGTCGGTGAAAGGGAATGGGAGAGCAAAAGAAGAGGGAGGAGGAGTGGGGCCTAGGTTTAGGGATTTAGGGGGAATGAAAGGAGTAATAGATGAATTGAAGATGGAAGTGATAGTGCCATTGTATCATCCACAATTGCCTCAATGGTTAGGTGTTAGGCCTATGGCTGGGATTTTGTTACATGGTCCCCCTGGTTGTGGGAAAACTAAGCTGGCTCATGCTATTGCTAATGAGACTGGTGTCCCTTTTTATCAGATTTCCGCCACCGAAGTCGTCTCGGGTGTTTCTGGTGCATCAGAGGAGAATATCCGTGAACTTTTCTCAAAAGCATATAGAACTGCTCCCTCAATTGTATTCATAGATGAAATTGATGCCATTGCTTCTAAAAGAGAAAACCTACAGAGAGAGATGGAGCGGCGAATCGTAACCCAATTGTTGACTTGCATGGATGAATCCCATAGGCTTGTGCAACACAGTGACAAGAATGCTGATTCCGAATCTGCTGGCAAGGGATCAGGATATGTTCTTGTAATAGGAGCGACCAATAGGCCTGATGCTGTTGACCCTGCGTTGAGGAGGCCTGGACGATTTGATCGGGAGATTACTCTTGGAGTTCCAGATGAAAATGCAAGGGTTGAGATACTCTCCGTATTGACACAAAAGCTAAGGCTTGCAGGTGATTTTGATCTGATAAAACTAGCCAGGGCCACTCCTGGCTTTGTTGGTGCTGACTTGACAGCTTTGGCTAATAAGGCTGGTAATCTTGCGATGAAAAGAATCATTGATCAAAGGAGGCTGGAGCTGTCTAAAGAGGACAGGGAACATGCGGAGGAGTGGTGGAAGGAACCTTGGTCTCCTGAAGAGATGGAAAAGCTAAGCATTACAATGACTGATTTTGAGGAGGCTGCAAAAATGGTGCAACCATCTTCAAGACGAGAAGGTTTCTCTGCCATTCCTAATGTCAAGTGGGAGGATGTTGGGGGGCTCAATCGGCTGCGGGAGGAGTTTGAACGCTTTGTTGTTAGACGTATAAAATATCCTGAACATTATGAGGAATTCGGAGTGGACATGGAAACTGGGTTTTTGCTTTATGGACCCCCTGGTTGTGGCAAGACTCTGATAGCGAAGGCTGTTGCTAACGAAGCTGGAGCCAATTTTATACACATCAAGGGTCCTGAACTTTTAAACAAATATGTTGGTGAAAGTGAATTGCATGTACGGACGATATTCAGTCGTGCAAGGACGTGTGCTCCATGCATACTTTTCTTTGATGAGGTCGATGCTTTGACAACTAAGCGTGGAAAAGAAGGGGGTTGGGTTGTTGAACGGCTTTTGAACCAGCTTTTGATTGAGTTAGATGGTGCTGAGCACAGGCGTGGCATCTACGTGATTGGTGCGACAAATAGGCCTGAGGTGATGGATTGTGCAGTTCTGAGGCCGGGGAGATTTGGGAAACTACTATATGTCCCTCTGCCTAGTCCTGACGAGCGTGGCTTGATCTTACAAACGTTAGCTAGAAGAAAACCGATAAATGCAAGTGTGGACTTGCTCGCCCTGGGAAGGAGCGCAACATGTGAAAATCTGAGTGGCGCTGACCTTGCTGCACTGATGAATGAAGCGGCAATGGCTGCCTTGGAAGAGAAGTTGACAACTTTTGAAGAGAAGCTGTCATCAAAGCAAAGTGTCTCAGATGCCACTCCATTCACCATCAAGTTTGCACATTTTGAGCAAGCCCTGAAGAAAGTTAACCCTTCTGTTTCCGAAAAGGTTTTCTTATATATTCCCATGCTTGTTATCAGATACTCAGCCGTATTACCTTTTTCTTTCGCCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_23232.p1 GENE.R_Transcript_23232~~R_Transcript_23232.p1 ORF type:complete len:827 (+),score=164.82,AAA|PF00004.25|6e-41,AAA|PF00004.25|1.5e-41,RuvB_N|PF05496.8|1.6e-06,RuvB_N|PF05496.8|0.00019,AAA_2|PF07724.10|1.2e-06,AAA_2|PF07724.10|0.03,AAA_17|PF13207.2|0.00064,AAA_17|PF13207.2|0.00058,AAA_5|PF07728.10|0.00012,AAA_5|PF07728.10|0.017,AAA_16|PF13191.2|0.002,AAA_16|PF13191.2|0.0065,AAA_16|PF13191.2|1.8e+03,AAA_22|PF13401.2|0.026,AAA_22|PF13401.2|0.031,AAA_22|PF13401.2|1.6e+02,TIP49|PF06068.9|6.9e+03,TIP49|PF06068.9|2e-05,TIP49|PF06068.9|0.082,RNA_helicase|PF00910.18|4.3e+03,RNA_helicase|PF00910.18|0.003,RNA_helicase|PF00910.18|0.083,AAA_33|PF13671.2|0.017,AAA_33|PF13671.2|0.012,AAA_14|PF13173.2|0.0015,AAA_14|PF13173.2|0.096,IstB_IS21|PF01695.13|0.0062,IstB_IS21|PF01695.13|0.039,AAA_28|PF13521.2|0.0013,AAA_28|PF13521.2|0.97,AAA_28|PF13521.2|1.5e+03,AAA_18|PF13238.2|0.017,AAA_18|PF13238.2|0.15,Bac_DnaA|PF00308.14|0.00063,Bac_DnaA|PF00308.14|4.5,AAA_19|PF13245.2|0.1,AAA_19|PF13245.2|0.069,Viral_helicase1|PF01443.14|7.4e+03,Viral_helicase1|PF01443.14|0.041,Viral_helicase1|PF01443.14|0.14,Viral_helicase1|PF01443.14|3.4e+03,Cytidylate_kin2|PF13189.2|0.0021,Cytidylate_kin2|PF13189.2|13,TsaE|PF02367.13|0.21,TsaE|PF02367.13|0.099,Mg_chelatase|PF01078.17|0.2,Mg_chelatase|PF01078.17|0.071,AAA_3|PF07726.7|0.025,AAA_3|PF07726.7|1.4 R_Transcript_23232:112-2592(+)
MGRKGGGAPPSRRPSTLSPAIIHRRIDACKINHLSPDLIAEHLYSTYPDYKHYKLIPFRTKITQLLHSRRPVSNPNPNPNQQQASDDSGSGSEPRRKKQKKQSIVEREEEKLLRRENDYIRRKSRENRVSVSDDSNQDSDSDTEPSVSTSEDAIYDEDVEPEFDLMKSMLRANYGGSKPSPSPKLKRKINLEVEEEVRREKEKAVMSEVVQDDEERESVKGNGRAKEEGGGVGPRFRDLGGMKGVIDELKMEVIVPLYHPQLPQWLGVRPMAGILLHGPPGCGKTKLAHAIANETGVPFYQISATEVVSGVSGASEENIRELFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLLTCMDESHRLVQHSDKNADSESAGKGSGYVLVIGATNRPDAVDPALRRPGRFDREITLGVPDENARVEILSVLTQKLRLAGDFDLIKLARATPGFVGADLTALANKAGNLAMKRIIDQRRLELSKEDREHAEEWWKEPWSPEEMEKLSITMTDFEEAAKMVQPSSRREGFSAIPNVKWEDVGGLNRLREEFERFVVRRIKYPEHYEEFGVDMETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELHVRTIFSRARTCAPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAEHRRGIYVIGATNRPEVMDCAVLRPGRFGKLLYVPLPSPDERGLILQTLARRKPINASVDLLALGRSATCENLSGADLAALMNEAAMAALEEKLTTFEEKLSSKQSVSDATPFTIKFAHFEQALKKVNPSVSEKVFLYIPMLVIRYSAVLPFSFA*

Click here to download the sequence:
Link to NCBI Protein BLAST